Parental gene:

UBA52, ENSGGOG00000004630

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:19:18962159..18965524(+)


>ENSGGOG00000004630
ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCCAGTGACACCATTGAGAATGTCAA
AGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCC
GCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCATTATTGAGCCT
TCCCTCCGCCAGCTTGCCCAGAAATACAACTGCGACAAGATGATCTGCCGCAAGTGCTATGCTCGCCTTCACCCTCGTGC
TGTCAACTGCCGCAAGAAGAAGTGTGGTCACACCAACAACCTGCGTCCCAAGAAGAAGGTCAAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 216 .90 RPM
SRP007412_cerebellum 211 .17 RPM
SRP007412_heart 175 .36 RPM
SRP007412_kidney 382 .47 RPM
SRP007412_liver 407 .28 RPM
SRP007412_testis 409 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000000351 ortholog_one2one 3 retrogenes
retro_cpor_1454, retro_cpor_1471, retro_cpor_1502,
Echinops telfairi ENSETEG00000003392 ortholog_one2one 35 retrogenes
retro_etel_1121, retro_etel_113, retro_etel_1165, retro_etel_1229, retro_etel_1520, retro_etel_1521, retro_etel_1598, retro_etel_1618, retro_etel_1623, retro_etel_1644, retro_etel_1657, retro_etel_1707, retro_etel_1709, retro_etel_174, retro_etel_1756, retro_etel_1760, retro_etel_1785, retro_etel_1854, retro_etel_196, retro_etel_2027, retro_etel_2101, retro_etel_2123, retro_etel_2158, retro_etel_2166, retro_etel_268, retro_etel_376, retro_etel_386, retro_etel_406, retro_etel_660, retro_etel_690, retro_etel_70, retro_etel_755, retro_etel_807, retro_etel_843, retro_etel_859,
Latimeria chalumnae ENSLACG00000008132 ortholog_many2many 1 retrogene
retro_lcha_11,
Macropus eugenii ENSMEUG00000013159 ortholog_one2one 5 retrogenes
retro_meug_1812, retro_meug_1868, retro_meug_441, retro_meug_513, retro_meug_750,
Myotis lucifugus ENSMLUG00000029594 ortholog_one2one 5 retrogenes
retro_mluc_1995, retro_mluc_2057, retro_mluc_2203, retro_mluc_44, retro_mluc_829,
Macaca mulatta ENSMMUG00000016085 ortholog_one2one 7 retrogenes
retro_mmul_1184, retro_mmul_1580, retro_mmul_1625, retro_mmul_2183, retro_mmul_2311, retro_mmul_232, retro_mmul_896,
Mustela putorius furo ENSMPUG00000015527 possible_ortholog 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 ortholog_one2one 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Pongo abelii ENSPPYG00000009746 possible_ortholog 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Pteropus vampyrus ENSPVAG00000024217 ortholog_one2one 19 retrogenes
retro_pvam_1029, retro_pvam_1102, retro_pvam_1146, retro_pvam_1164, retro_pvam_1320, retro_pvam_1325, retro_pvam_1361, retro_pvam_1434, retro_pvam_1447, retro_pvam_211, retro_pvam_327, retro_pvam_517, retro_pvam_528, retro_pvam_600, retro_pvam_632, retro_pvam_655, retro_pvam_749, retro_pvam_987, retro_pvam_994,
Sorex araneus ENSSARG00000000984 possible_ortholog 11 retrogenes
retro_sara_145, retro_sara_164, retro_sara_192, retro_sara_256, retro_sara_281, retro_sara_331, retro_sara_344, retro_sara_599, retro_sara_67, retro_sara_687, retro_sara_94,
Ictidomys tridecemlineatus ENSSTOG00000004678 possible_ortholog 1 retrogene
retro_itri_49,
Xiphophorus maculatus ENSXMAG00000003911 ortholog_one2many 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_905 82.17 100.00
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2. retro_ggor_1021 80.00 82.03
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3. retro_ggor_1045 83.59 100.00
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4. retro_ggor_1265 78.12 100.00
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5. retro_ggor_1835 88.37 100.00
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6. retro_ggor_2579 85.16 100.00
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7. retro_ggor_2687 81.31 82.81
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8. retro_ggor_2782 84.50 100.00
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Download FASTA sequences of all ENSGGOG00000004630 retrocopies