Parental gene:

Ldha, ENSRNOG00000013009

Aliases:Ldha, Ldh1
Description:L-lactate dehydrogenase A chain [Source:UniProtKB/Swiss-Prot;Acc:P04642]
Organism:Rat (Rattus norvegicus)
Coordinates:1:103975206..103984632(+)


>ENSRNOG00000013009
ATGGCAGCCCTCAAGGACCAGCTGATTGTGAATCTTCTTAAGGAAGAACAGGTCCCCCAGAACAAGATTACAGTTGTTGG
GGTTGGTGCTGTTGGCATGGCTTGTGCCATCAGTATCTTAATGAAGGACTTGGCTGATGAGCTTGCCCTTGTTGATGTCA
TAGAAGATAAGCTAAAGGGAGAGATGATGGATCTTCAGCATGGCAGCCTTTTCCTTAAGACACCAAAAATTGTCTCCAGC
AAAGATTATAGTGTGACTGCAAACTCCAAGCTGGTCATTATCACCGCGGGGGCCCGTCAGCAAGAGGGAGAGAGCCGGCT
CAATTTGGTCCAGCGAAACGTGAACATCTTCAAGTTCATCATTCCAAATGTTGTGAAATACAGTCCACAGTGCAAACTGC
TCATCGTCTCAAACCCAGTGGATATCTTGACCTACGTGGCTTGGAAGATCAGCGGCTTCCCCAAAAACAGAGTTATTGGA
AGTGGTTGCAATCTGGATTCGGCTCGGTTCCGTTACCTGATGGGAGAAAGGCTGGGAGTTCATCCACTGAGCTGTCACGG
GTGGGTCCTGGGAGAGCATGGCGACTCCAGTGTGCCTGTGTGGAGTGGTGTGAATGTCGCCGGCGTCTCCCTGAAGTCTC
TGAACCCGCAGCTGGGCACGGATGCAGACAAGGAGCAGTGGAAGGATGTGCACAAGCAGGTGGTTGACAGTGCATACGAA
GTGATCAAGCTGAAAGGTTACACATCCTGGGCCATTGGCCTCTCCGTGGCAGACTTGGCCGAGAGCATAATGAAGAACCT
TAGGCGGGTGCATCCCATTTCCACCATGATTAAGGGTCTCTATGGAATCAAGGAGGATGTCTTCCTCAGCGTCCCATGTA
TCCTGGGACAAAATGGAATCTCAGATGTTGTGAAGGTGACACTGACTCCTGACGAGGAGGCCCGCCTGAAGAAGAGTGCA
GATACCCTCTGGGGAATCCAGAAGGAGCTGCAGTTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 158 .75 RPM
SRP017611_kidney 121 .77 RPM
SRP017611_liver 521 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017854 ortholog_one2many 2 retrogenes
retro_amel_389, retro_amel_462,
Bos taurus ENSBTAG00000008683 ortholog_one2many 2 retrogenes
retro_btau_1715, retro_btau_1822,
Choloepus hoffmanni ENSCHOG00000009977 ortholog_one2many 14 retrogenes
retro_chof_1038, retro_chof_144, retro_chof_1489, retro_chof_1524, retro_chof_1547, retro_chof_172, retro_chof_1874, retro_chof_2121, retro_chof_217, retro_chof_2365, retro_chof_2588, retro_chof_2611, retro_chof_552, retro_chof_990,
Callithrix jacchus ENSCJAG00000007094 ortholog_many2many 1 retrogene
retro_cjac_2290,
Cavia porcellus ENSCPOG00000011926 ortholog_one2many 2 retrogenes
retro_cpor_1055, retro_cpor_427,
Dasypus novemcinctus ENSDNOG00000018915 ortholog_one2many 11 retrogenes
retro_dnov_1063, retro_dnov_1366, retro_dnov_1429, retro_dnov_1707, retro_dnov_1848, retro_dnov_2417, retro_dnov_362, retro_dnov_669, retro_dnov_797, retro_dnov_821, retro_dnov_887,
Equus caballus ENSECAG00000020669 ortholog_one2many 5 retrogenes
retro_ecab_1004, retro_ecab_765, retro_ecab_837, retro_ecab_924, retro_ecab_933,
Echinops telfairi ENSETEG00000007508 ortholog_one2many 15 retrogenes
retro_etel_1091, retro_etel_1192, retro_etel_1243, retro_etel_1309, retro_etel_1439, retro_etel_1609, retro_etel_1870, retro_etel_1916, retro_etel_1969, retro_etel_1996, retro_etel_2209, retro_etel_361, retro_etel_392, retro_etel_828, retro_etel_884,
Homo sapiens ENSG00000134333 ortholog_one2many 5 retrogenes
retro_hsap_2097, retro_hsap_2285, retro_hsap_3021, retro_hsap_323, retro_hsap_4231,
Gorilla gorilla ENSGGOG00000010350 ortholog_many2many 3 retrogenes
retro_ggor_1698, retro_ggor_349, retro_ggor_619,
Loxodonta africana ENSLAFG00000011307 ortholog_many2many 1 retrogene
retro_lafr_11,
Macropus eugenii ENSMEUG00000001462 ortholog_one2many 91 retrogenes
retro_meug_101, retro_meug_1029, retro_meug_103, retro_meug_1082, retro_meug_1088, retro_meug_1105, retro_meug_1140, retro_meug_1162, retro_meug_1189, retro_meug_1190, retro_meug_1260, retro_meug_1288, retro_meug_1295, retro_meug_1301, retro_meug_1323, retro_meug_1329, retro_meug_1332, retro_meug_1356, retro_meug_1368, retro_meug_1376, retro_meug_1400, retro_meug_1402, retro_meug_1404, retro_meug_1417, retro_meug_1419, retro_meug_1420, retro_meug_1422, retro_meug_1484, retro_meug_1535, retro_meug_155, retro_meug_1556, retro_meug_1620, retro_meug_1632, retro_meug_1652, retro_meug_1674, retro_meug_1685, retro_meug_1720, retro_meug_1721, retro_meug_1747, retro_meug_1749, retro_meug_1765, retro_meug_1779, retro_meug_1781, retro_meug_181, retro_meug_1824, retro_meug_1875, retro_meug_1898, retro_meug_1906, retro_meug_1915, retro_meug_1927, retro_meug_1945, retro_meug_1977, retro_meug_200, retro_meug_2000, retro_meug_2022, retro_meug_2067, retro_meug_2107, retro_meug_2126, retro_meug_2137, retro_meug_2139, retro_meug_2168, retro_meug_226, retro_meug_244, retro_meug_291, retro_meug_336, retro_meug_351, retro_meug_436, retro_meug_448, retro_meug_477, retro_meug_532, retro_meug_572, retro_meug_590, retro_meug_591, retro_meug_626, retro_meug_634, retro_meug_638, retro_meug_639, retro_meug_660, retro_meug_68, retro_meug_736, retro_meug_737, retro_meug_832, retro_meug_861, retro_meug_867, retro_meug_870, retro_meug_891, retro_meug_916, retro_meug_927, retro_meug_971, retro_meug_980, retro_meug_981,
Macaca mulatta ENSMMUG00000031024 ortholog_one2many 2 retrogenes
retro_mmul_1037, retro_mmul_587,
Monodelphis domestica ENSMODG00000006522 ortholog_many2many 2 retrogenes
retro_mdom_161, retro_mdom_206,
Mus musculus ENSMUSG00000063229 ortholog_one2many 14 retrogenes
retro_mmus_1044, retro_mmus_1300, retro_mmus_1514, retro_mmus_1608, retro_mmus_1753, retro_mmus_1887, retro_mmus_1889, retro_mmus_1925, retro_mmus_2078, retro_mmus_2592, retro_mmus_2885, retro_mmus_3150, retro_mmus_3694, retro_mmus_497,
Nomascus leucogenys ENSNLEG00000017767 ortholog_one2many 4 retrogenes
retro_nleu_1037, retro_nleu_1303, retro_nleu_1766, retro_nleu_820,
Oryctolagus cuniculus ENSOCUG00000015939 ortholog_many2many 6 retrogenes
retro_ocun_1597, retro_ocun_1817, retro_ocun_246, retro_ocun_338, retro_ocun_574, retro_ocun_746,
Pongo abelii ENSPPYG00000003437 ortholog_one2many 5 retrogenes
retro_pabe_2002, retro_pabe_2039, retro_pabe_2423, retro_pabe_3407, retro_pabe_364,
Pan troglodytes ENSPTRG00000003421 ortholog_one2many 5 retrogenes
retro_ptro_1540, retro_ptro_1618, retro_ptro_2039, retro_ptro_259, retro_ptro_2875,
Rattus norvegicus ENSRNOG00000013000 within_species_paralog 3 retrogenes
retro_rnor_2697, retro_rnor_2749, retro_rnor_2834,
Rattus norvegicus ENSRNOG00000013103 within_species_paralog 2 retrogenes
retro_rnor_2081, retro_rnor_499,
Sorex araneus ENSSARG00000001224 ortholog_one2many 1 retrogene
retro_sara_657,
Sarcophilus harrisii ENSSHAG00000015776 ortholog_one2many 1 retrogene
retro_shar_814,
Sus scrofa ENSSSCG00000013366 ortholog_one2many 1 retrogene
retro_sscr_12,
Tarsius syrichta ENSTSYG00000008062 possible_ortholog 4 retrogenes
retro_tsyr_1811, retro_tsyr_2064, retro_tsyr_2071, retro_tsyr_731,
Tursiops truncatus ENSTTRG00000013756 ortholog_one2many 2 retrogenes
retro_ttru_1269, retro_ttru_1802,
Vicugna pacos ENSVPAG00000010215 ortholog_one2many 5 retrogenes
retro_vpac_175, retro_vpac_222, retro_vpac_237, retro_vpac_629, retro_vpac_79,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_490 65.55 71.08
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2. retro_rnor_491 65.55 71.08
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3. retro_rnor_563 84.43 100.00
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4. retro_rnor_578 70.48 100.00
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5. retro_rnor_843 84.50 76.81
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6. retro_rnor_1131 84.78 82.23
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7. retro_rnor_1336 84.04 56.33
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8. retro_rnor_1738 89.02 51.81
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9. retro_rnor_1769 86.03 68.37
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10. retro_rnor_1881 87.72 51.51
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11. retro_rnor_2146 86.44 53.01
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12. retro_rnor_2377 85.90 68.07
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13. retro_rnor_2560 98.49 100.00
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14. retro_rnor_2830 67.45 88.25
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15. retro_rnor_2950 79.62 95.78
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16. retro_rnor_2957 87.68 63.55
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17. retro_rnor_2984 87.60 77.41
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Download FASTA sequences of all ENSRNOG00000013009 retrocopies