RetrogeneDB ID: | retro_rnor_2560 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 8:33096308..33097304(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000009373 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSRNOG00000013009 | ||
Aliases: | Ldha, Ldh1 | ||
Description: | L-lactate dehydrogenase A chain [Source:UniProtKB/Swiss-Prot;Acc:P04642] |
Percent Identity: | 98.49 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAALKDQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL |
MAALK.QLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL | |
Retrocopy | MAALKEQLIVNLLKEEQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSL |
Parental | FLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPV |
FLKTPKIVSSKDYSVTANSKLVIIT.GARQQEGES.LNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPV | |
Retrocopy | FLKTPKIVSSKDYSVTANSKLVIITSGARQQEGESQLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPV |
Parental | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVS |
DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNV.GVS | |
Retrocopy | DILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVTGVS |
Parental | LKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGL |
LKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIK.L | |
Retrocopy | LKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKSL |
Parental | YGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKELQF |
YGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKELQF | |
Retrocopy | YGIKEDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .50 RPM | 158 .75 RPM |
SRP017611_kidney | 0 .49 RPM | 121 .77 RPM |
SRP017611_liver | 1 .28 RPM | 521 .70 RPM |