RetrogeneDB ID: | retro_rnor_2697 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:80559089..80559700(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldhb | ||
Ensembl ID: | ENSRNOG00000013000 | ||
Aliases: | Ldhb, Ldh2 | ||
Description: | L-lactate dehydrogenase B chain [Source:UniProtKB/Swiss-Prot;Acc:P42123] |
Percent Identity: | 56.04 % |
Parental protein coverage: | 61.08 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | RNVNVFKFIIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIH |
.N..VFK...PQ..KYSPDCTI.VVSNPVD.LT.VT..L...P.H.VI.....L.SARF.Y..AEK.... | |
Retrocopy | KNASVFKSSFPQTIKYSPDCTITVVSNPVDNLT*VT*NLNVFPVHHVIRNVRKLSSARFCYVLAEKVALY |
Parental | PSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKLKGYT-NW |
PS.C.GWILG.HGDSS.A..S.V...G.SLQE..PEM......E.WKE.H.MVV.S.Y..IK.K.YT... | |
Retrocopy | PSGCQGWILGGHGDSSMAL*SRVKMVGISLQESSPEMRMKSVRESWKEEHDMVVESTYKIIKVKRYT<HC |
Parental | AIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSL-PCILNARGLTSVI-NQKLKDDEVAQ |
A.G..VA.L...MLKN...I...ST.V...YGI.N.VFLSL.P.ILN...LTS.I.NQKLK..EVA. | |
Retrocopy | AVGFYVAALLKPMLKNPPCIQTMSTVVIEIYGIKNKVFLSL<P*ILNSQRLTSTI>NQKLKVHEVAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 330 .44 RPM |
SRP017611_kidney | 0 .07 RPM | 514 .78 RPM |
SRP017611_liver | 0 .00 RPM | 1 .61 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_335 |