RetrogeneDB ID: | retro_rnor_1881 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:42604626..42605139(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSRNOG00000013009 | ||
Aliases: | Ldha, Ldh1 | ||
Description: | L-lactate dehydrogenase A chain [Source:UniProtKB/Swiss-Prot;Acc:P04642] |
Percent Identity: | 87.72 % |
Parental protein coverage: | 51.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVH |
G..LDSA.F.YLMGERLGVH.LSCH.WVLGEHGDSSVPVWSGVNVAGVSLK.LNP.LGT..DK..WKDVH | |
Retrocopy | GRDLDSAWFCYLMGERLGVHLLSCHRWVLGEHGDSSVPVWSGVNVAGVSLKPLNPELGTHTDK*PWKDVH |
Parental | KQVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGIS |
..VVDSA.EVIKLKG.TSWAIGLS.ADLAESIMKNLR.VHPISTMIKGLYGI..DVFLSVPCILGQNGIS | |
Retrocopy | RHVVDSA*EVIKLKGCTSWAIGLSMADLAESIMKNLRQVHPISTMIKGLYGINDDVFLSVPCILGQNGIS |
Parental | DVVKVTLTPDEEARLKKSADTLWGIQKELQF |
DVVKVTLTP.EEARLKKSADTLWGIQKELQF | |
Retrocopy | DVVKVTLTPEEEARLKKSADTLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 158 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 121 .77 RPM |
SRP017611_liver | 0 .00 RPM | 521 .70 RPM |