RetrogeneDB ID: | retro_rnor_1769 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:52206879..52207558(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000030678 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldha | ||
Ensembl ID: | ENSRNOG00000013009 | ||
Aliases: | Ldha, Ldh1 | ||
Description: | L-lactate dehydrogenase A chain [Source:UniProtKB/Swiss-Prot;Acc:P04642] |
Percent Identity: | 86.03 % |
Parental protein coverage: | 68.37 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLM |
RL.LVQRNVN.FKFIIPN.VK..SPQCKLLIVSNP.DILTYVAW.ISGFPK.RVIGSGCN.DSA.F..LM | |
Retrocopy | RLDLVQRNVNTFKFIIPNIVKT<SPQCKLLIVSNPMDILTYVAWRISGFPKSRVIGSGCNPDSAWFH*LM |
Parental | GERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL |
GERLGVHPLSCHGWVLGEHGD.SVPVWSGVNVAGVS.KSLN..LGT.ADKEQWK..HKQVVDSAYEVIKL | |
Retrocopy | GERLGVHPLSCHGWVLGEHGDPSVPVWSGVNVAGVSRKSLNRELGTNADKEQWKEAHKQVVDSAYEVIKL |
Parental | KGYTSWAIGLSVADLAESI-MKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKVTLTPDEE |
KGYTSWAIGLSVADLA.S..MKNLRRVHPISTMIKGLYG...DVFLSVPCILGQNGISD.VK.TLTP.EE | |
Retrocopy | KGYTSWAIGLSVADLAKST<MKNLRRVHPISTMIKGLYGLNDDVFLSVPCILGQNGISDIVKATLTPEEE |
Parental | ARLKKSADTLWGIQKELQF |
...KKSA.TLWGIQKELQF | |
Retrocopy | VGMKKSAATLWGIQKELQF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 158 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 121 .77 RPM |
SRP017611_liver | 0 .00 RPM | 521 .70 RPM |