RetrogeneDB ID: | retro_rnor_2834 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:89039926..89040800(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldhb | ||
Ensembl ID: | ENSRNOG00000013000 | ||
Aliases: | Ldhb, Ldh2 | ||
Description: | L-lactate dehydrogenase B chain [Source:UniProtKB/Swiss-Prot;Acc:P42123] |
Percent Identity: | 75.85 % |
Parental protein coverage: | 87.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLV |
G.SLADELALVDVLEDKL.GEMM.LQHGSLFLQTPKIVAD.DYS.T.NSKIV.V..G..QQEG.SRL.LV | |
Retrocopy | GMSLADELALVDVLEDKLRGEMMGLQHGSLFLQTPKIVADEDYSLTVNSKIVMV--GICQQEGKSRLILV |
Parental | QRNVNVFKFIIPQIVKYSPDCTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGI |
QRN.N.F.FIIPQIVKYSP.CTII..SN.VD.LTYVTWKLSG.PKH.V.GS..NLDSA.F.YLMA.KL.. | |
Retrocopy | QRNINIFTFIIPQIVKYSPGCTIIMFSNQVDSLTYVTWKLSGFPKHHVFGSRYNLDSALFHYLMAAKLCS |
Parental | HPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVDSAYEVIKLK-GYTN |
HPS.C.G.ILGEHGDSSVAV.S...V.GVSLQEL.P...TDN.SENWK...KMVV.S.YEVIKLK...TN | |
Retrocopy | HPSTCQG*ILGEHGDSSVAV*SRMKVTGVSLQELYPKLETDNASENWKKMQKMVVNSVYEVIKLK>AVTN |
Parental | WAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLRKS |
WAI...V.D..ES..KNLS..HP.S.MV.GMYGIENEVFL.L.CILNA.GLT.VINQKLKDDEVAQLRKS | |
Retrocopy | WAISITVDDFLESIQKNLSQVHPMSIMVRGMYGIENEVFLNLLCILNAQGLTRVINQKLKDDEVAQLRKS |
Parental | ADTLWDIQKDLKDL |
.DT.WDIQKDLKDL | |
Retrocopy | TDTPWDIQKDLKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 330 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 514 .78 RPM |
SRP017611_liver | 0 .00 RPM | 1 .61 RPM |