RetrogeneDB ID: | retro_rnor_1697 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:240799841..240800225(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSRNOG00000000520 | ||
Aliases: | Srsf3, Sfrs3 | ||
Description: | splicing factor, arginine/serine-rich 3 [Source:RefSeq peptide;Acc:NP_001041372] |
Percent Identity: | 71.88 % |
Parental protein coverage: | 78.05 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT |
MH.DSC.LD....VGN.GNNGN.TELE..FGYYGPL..VW.A.NPPGFAFVEFEDP.DA.DAVRELDGRT | |
Retrocopy | MHHDSCLLDKNLIVGNRGNNGNRTELEQVFGYYGPL*CVWIA*NPPGFAFVEFEDP*DATDAVRELDGRT |
Parental | LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSFSRSRSRS |
LCGC.VRVELSNG...SRN.G..PSW..RPRDDY..RSPP...RSPRRR..S.S...S | |
Retrocopy | LCGCHVRVELSNGVNTSRNGGLLPSWDHRPRDDYHKRSPPLWLRSPRRRKVSVS*EKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .92 RPM |
SRP017611_liver | 0 .00 RPM | 38 .86 RPM |