RetrogeneDB ID: | retro_rnor_1889 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:66506365..66506657(-) | ||
Located in intron of: | ENSRNOG00000018719 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Srsf3 | ||
Ensembl ID: | ENSRNOG00000000520 | ||
Aliases: | Srsf3, Sfrs3 | ||
Description: | splicing factor, arginine/serine-rich 3 [Source:RefSeq peptide;Acc:NP_001041372] |
Percent Identity: | 76.53 % |
Parental protein coverage: | 59.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRSF-SRSRSRSLSRDRRRE |
GRTLCGC..RVEL.NGEKRSRNRG.P.SWG.RPRDD.RRRSPPP......RR...S.S.SRSLSRDRRRE | |
Retrocopy | GRTLCGCHLRVELLNGEKRSRNRGLPTSWGHRPRDDSRRRSPPPPLHRSPRRRI>S*SQSRSLSRDRRRE |
Parental | RSLSRERNHKPSRSFSRSRSRSRSNERK |
RSLS.ERNH.PSRSFSRS..RSR.NERK | |
Retrocopy | RSLSHERNHRPSRSFSRSYRRSRANERK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 65 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .92 RPM |
SRP017611_liver | 0 .00 RPM | 38 .86 RPM |