Parental gene:

UBA52, ENSSARG00000000984

Aliases:None
Description:ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458]
Organism:Shrew (Sorex araneus)
Coordinates:GeneScaffold_6691:4035..4630(+)


>ENSSARG00000000984
ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTAGAGCCCAGTGACACCATTGAGAATGTCAA
AGCCAAAATCCAGGACAAGGAAGGCATCCCGCCGGACCAGCAGCGTCTGATTTTTGCGGGCAAACAGCTGGAGGATGGCC
GCACCCTCTCGGACTACAACATCCAGAAAGAGTCCACCCTGCATCTGGTGCTGCGCCTCCGCGGGGGCATCATTGAGCCT
TCGCTGCGCCAGCTGGCCCAGAAGTACAACTGTGAGAAGATGATCTGCCGGAAGTGCTACGCCCGCCTGCACCCCCGCGC
CGTCAACTGCCGCAAGAAGAAGTGCGGGCACACCAACAATCTGCGCCCCAAGAAGAGGCTCAAATAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011356 possible_ortholog 10 retrogenes
retro_amel_1045, retro_amel_1416, retro_amel_1455, retro_amel_1759, retro_amel_1849, retro_amel_214, retro_amel_800, retro_amel_904, retro_amel_941, retro_amel_973,
Callithrix jacchus ENSCJAG00000007470 possible_ortholog 22 retrogenes
retro_cjac_1363, retro_cjac_1388, retro_cjac_1426, retro_cjac_1485, retro_cjac_1521, retro_cjac_1561, retro_cjac_1731, retro_cjac_1743, retro_cjac_2002, retro_cjac_207, retro_cjac_2254, retro_cjac_2292, retro_cjac_2413, retro_cjac_2501, retro_cjac_2505, retro_cjac_2898, retro_cjac_3054, retro_cjac_658, retro_cjac_683, retro_cjac_883, retro_cjac_892, retro_cjac_898,
Cavia porcellus ENSCPOG00000000351 possible_ortholog 3 retrogenes
retro_cpor_1454, retro_cpor_1471, retro_cpor_1502,
Equus caballus ENSECAG00000020660 possible_ortholog 8 retrogenes
retro_ecab_1014, retro_ecab_107, retro_ecab_313, retro_ecab_641, retro_ecab_772, retro_ecab_835, retro_ecab_836, retro_ecab_857,
Felis catus ENSFCAG00000009745 possible_ortholog 14 retrogenes
retro_fcat_1159, retro_fcat_1204, retro_fcat_1226, retro_fcat_1232, retro_fcat_1382, retro_fcat_1428, retro_fcat_1449, retro_fcat_1540, retro_fcat_1661, retro_fcat_86, retro_fcat_876, retro_fcat_909, retro_fcat_939, retro_fcat_989,
Gorilla gorilla ENSGGOG00000004630 possible_ortholog 8 retrogenes
retro_ggor_1021, retro_ggor_1045, retro_ggor_1265, retro_ggor_1835, retro_ggor_2579, retro_ggor_2687, retro_ggor_2782, retro_ggor_905,
Latimeria chalumnae ENSLACG00000008132 possible_ortholog 1 retrogene
retro_lcha_11,
Myotis lucifugus ENSMLUG00000029594 possible_ortholog 5 retrogenes
retro_mluc_1995, retro_mluc_2057, retro_mluc_2203, retro_mluc_44, retro_mluc_829,
Macaca mulatta ENSMMUG00000016085 possible_ortholog 7 retrogenes
retro_mmul_1184, retro_mmul_1580, retro_mmul_1625, retro_mmul_2183, retro_mmul_2311, retro_mmul_232, retro_mmul_896,
Mustela putorius furo ENSMPUG00000015527 possible_ortholog 8 retrogenes
retro_mputfur_1059, retro_mputfur_1119, retro_mputfur_1126, retro_mputfur_382, retro_mputfur_516, retro_mputfur_713, retro_mputfur_78, retro_mputfur_945,
Mus musculus ENSMUSG00000090137 possible_ortholog 3 retrogenes
retro_mmus_101, retro_mmus_129, retro_mmus_31,
Pongo abelii ENSPPYG00000009746 possible_ortholog 2 retrogenes
retro_pabe_111, retro_pabe_3291,
Ictidomys tridecemlineatus ENSSTOG00000004678 possible_ortholog 1 retrogene
retro_itri_49,
Xiphophorus maculatus ENSXMAG00000003911 possible_ortholog 1 retrogene
retro_xmac_6,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sara_67 64.75 94.53
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2. retro_sara_94 68.09 73.44
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3. retro_sara_145 55.71 53.91
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4. retro_sara_164 60.76 60.94
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5. retro_sara_192 65.79 59.38
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6. retro_sara_256 84.00 58.59
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7. retro_sara_281 95.31 100.00
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8. retro_sara_331 66.67 58.59
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9. retro_sara_344 100.00 59.38
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10. retro_sara_599 82.17 99.22
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11. retro_sara_687 80.26 58.59
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Download FASTA sequences of all ENSSARG00000000984 retrocopies