Parental gene:

RPL32, ENSSSCG00000027637

Aliases:None
Description:60S ribosomal protein L32 [Source:UniProtKB/Swiss-Prot;Acc:Q6QAT0]
Organism:Pig (Sus scrofa)
Coordinates:13:76055677..76062320(-)


>ENSSSCG00000027637
ATGGCTGCTCTCAGACCCCTTGTGAAGCCCAAGATCGTCAAAAAGAGGACCAAGAAGTTCATCCGGCACCAGTCAGACCG
ATATGTCAAAATTAAGCGGAACTGGCGGAAACCCAGAGGCATTGACAACAGGGTGCGGAGAAGGTTCAAGGGCCAGATCT
TGATGCCCAACATTGGTTATGGGAGCAACAAGAAAACAAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTTCTGGTACAC
AATGTAAAAGAGCTTGAAGTGCTGCTAATGTGCAACAAATCATACTGTGCTGAGATTGCTCACAACGTCTCTTCCAAGAA
CCGCAAAGCCATCGTCGAGAGAGCGGCCCAACTGGCCATCAGGGTCACCAATCCCAATGCCAGGCTGCGCAGCGAAGAAA
ATGAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 136 .31 RPM
SRP014902_testis 449 .66 RPM
SRP018288_heart 214 .97 RPM
SRP018288_kidney 188 .64 RPM
SRP018288_liver 162 .15 RPM
SRP018288_lung 149 .99 RPM
SRP018856_adipose 864 .32 RPM
SRP035408_brain 127 .77 RPM
SRP035408_liver 100 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014763 ortholog_one2many 3 retrogenes
retro_acar_104, retro_acar_125, retro_acar_67,
Ailuropoda melanoleuca ENSAMEG00000004583 possible_ortholog 26 retrogenes
retro_amel_1004, retro_amel_1041, retro_amel_1059, retro_amel_112, retro_amel_1274, retro_amel_1284, retro_amel_13, retro_amel_1394, retro_amel_1450, retro_amel_150, retro_amel_1651, retro_amel_168, retro_amel_1766, retro_amel_1827, retro_amel_1897, retro_amel_274, retro_amel_275, retro_amel_44, retro_amel_573, retro_amel_658, retro_amel_71, retro_amel_776, retro_amel_781, retro_amel_871, retro_amel_892, retro_amel_923,
Bos taurus ENSBTAG00000015283 possible_ortholog 10 retrogenes
retro_btau_1102, retro_btau_1391, retro_btau_1568, retro_btau_1645, retro_btau_1728, retro_btau_1764, retro_btau_377, retro_btau_623, retro_btau_631, retro_btau_654,
Choloepus hoffmanni ENSCHOG00000013534 possible_ortholog 27 retrogenes
retro_chof_1131, retro_chof_1164, retro_chof_1181, retro_chof_1234, retro_chof_1461, retro_chof_152, retro_chof_1821, retro_chof_1957, retro_chof_2022, retro_chof_205, retro_chof_2090, retro_chof_2146, retro_chof_2242, retro_chof_2265, retro_chof_2301, retro_chof_2410, retro_chof_2509, retro_chof_2527, retro_chof_2606, retro_chof_276, retro_chof_286, retro_chof_313, retro_chof_554, retro_chof_585, retro_chof_607, retro_chof_758, retro_chof_913,
Equus caballus ENSECAG00000007201 possible_ortholog 4 retrogenes
retro_ecab_1115, retro_ecab_26, retro_ecab_369, retro_ecab_698,
Loxodonta africana ENSLAFG00000032737 ortholog_one2one 1 retrogene
retro_lafr_14,
Macaca mulatta ENSMMUG00000001340 possible_ortholog 6 retrogenes
retro_mmul_106, retro_mmul_117, retro_mmul_126, retro_mmul_79, retro_mmul_93, retro_mmul_95,
Mustela putorius furo ENSMPUG00000017189 ortholog_one2one 4 retrogenes
retro_mputfur_121, retro_mputfur_76, retro_mputfur_8, retro_mputfur_85,
Nomascus leucogenys ENSNLEG00000004789 ortholog_one2one 12 retrogenes
retro_nleu_1109, retro_nleu_125, retro_nleu_1452, retro_nleu_1642, retro_nleu_193, retro_nleu_224, retro_nleu_2808, retro_nleu_2809, retro_nleu_442, retro_nleu_497, retro_nleu_56, retro_nleu_603,
Otolemur garnettii ENSOGAG00000028498 ortholog_one2one 24 retrogenes
retro_ogar_129, retro_ogar_1321, retro_ogar_1340, retro_ogar_1360, retro_ogar_1425, retro_ogar_1524, retro_ogar_160, retro_ogar_1683, retro_ogar_1766, retro_ogar_1833, retro_ogar_2032, retro_ogar_2412, retro_ogar_2416, retro_ogar_2515, retro_ogar_3247, retro_ogar_3384, retro_ogar_545, retro_ogar_56, retro_ogar_571, retro_ogar_776, retro_ogar_870, retro_ogar_891, retro_ogar_924, retro_ogar_973,
Pongo abelii ENSPPYG00000013391 possible_ortholog 2 retrogenes
retro_pabe_135, retro_pabe_98,
Rattus norvegicus ENSRNOG00000010746 possible_ortholog 4 retrogenes
retro_rnor_179, retro_rnor_27, retro_rnor_278, retro_rnor_327,
Sarcophilus harrisii ENSSHAG00000012782 ortholog_one2many 1 retrogene
retro_shar_580,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_76 85.93 100.00
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2. retro_sscr_107 88.89 100.00
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3. retro_sscr_165 79.23 95.56
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4. retro_sscr_793 82.91 86.67
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5. retro_sscr_957 81.34 98.52
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6. retro_sscr_989 76.47 100.00
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7. retro_sscr_1001 77.34 94.81
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8. retro_sscr_1054 84.56 100.00
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9. retro_sscr_1081 84.11 79.26
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Download FASTA sequences of all ENSSSCG00000027637 retrocopies