RetrogeneDB ID: | retro_sscr_76 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:98584617..98585025(-) | ||
Located in intron of: | ENSSSCG00000029485 | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000008425 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSSSCG00000027637 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L32 [Source:UniProtKB/Swiss-Prot;Acc:Q6QAT0] |
Percent Identity: | 85.93 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
MAALRPL.KPK.VKKRTKKFI.HQSDRY.KIK.NW.KPRGI.NRV.RRFKGQILMPN.GYGSNKKTKHML | |
Retrocopy | MAALRPLLKPKTVKKRTKKFIWHQSDRYAKIKWNWWKPRGINNRVHRRFKGQILMPNTGYGSNKKTKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
PSGF.KFLV.NVKELEVLLMCNKS..AEI.HNVSSKN.KAIVERAAQLAIRVTNP.ARL...ENE | |
Retrocopy | PSGFQKFLVYNVKELEVLLMCNKSHSAEIVHNVSSKNCKAIVERAAQLAIRVTNPKARLHGQENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 136 .31 RPM |
SRP014902_testis | 0 .00 RPM | 449 .66 RPM |
SRP018288_heart | 0 .00 RPM | 214 .97 RPM |
SRP018288_kidney | 0 .00 RPM | 188 .64 RPM |
SRP018288_liver | 0 .00 RPM | 162 .15 RPM |
SRP018288_lung | 0 .00 RPM | 149 .99 RPM |
SRP018856_adipose | 0 .06 RPM | 864 .32 RPM |
SRP035408_brain | 0 .00 RPM | 127 .77 RPM |
SRP035408_liver | 0 .00 RPM | 100 .81 RPM |