RetrogeneDB ID: | retro_sscr_107 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 1:56348861..56349266(+) | ||
Located in intron of: | ENSSSCG00000004273 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL32 | ||
Ensembl ID: | ENSSSCG00000027637 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L32 [Source:UniProtKB/Swiss-Prot;Acc:Q6QAT0] |
Percent Identity: | 88.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML |
MAALRPL.KPKI.KKRTKKFIRHQSD..VKIK.NW.KPRGIDNRVRR.FKGQILMPNIGYGSNKKTKHML | |
Retrocopy | MAALRPLMKPKIIKKRTKKFIRHQSDGCVKIKQNWQKPRGIDNRVRRKFKGQILMPNIGYGSNKKTKHML |
Parental | PSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE |
PSGFRKFLVH..KEL.VLL.CNKSYCAEI.HN.SSKNRKAIVERAAQLAIRVTNPN.RLRS.ENE | |
Retrocopy | PSGFRKFLVHTLKELKVLLICNKSYCAEISHNISSKNRKAIVERAAQLAIRVTNPNTRLRSKENE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .40 RPM | 136 .31 RPM |
SRP014902_testis | 1 .56 RPM | 449 .66 RPM |
SRP018288_heart | 1 .99 RPM | 214 .97 RPM |
SRP018288_kidney | 1 .28 RPM | 188 .64 RPM |
SRP018288_liver | 1 .12 RPM | 162 .15 RPM |
SRP018288_lung | 0 .31 RPM | 149 .99 RPM |
SRP018856_adipose | 5 .43 RPM | 864 .32 RPM |
SRP035408_brain | 0 .83 RPM | 127 .77 RPM |
SRP035408_liver | 0 .47 RPM | 100 .81 RPM |