RetrogeneDB ID:

retro_nleu_2809

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397436.1:2320917..2321321(+)
Located in intron of:ENSNLEG00000000636
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL32
Ensembl ID:ENSNLEG00000004789
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2809
ATGGCTGCCCTTAGACCCCTTGTGAAGCCCAAGATCATCAAAAAGAGAACCAAGAAGTTCATCCGGCACCAGTCAGACCG
ATATGTCAAAATTAAGCGTAACTGGCGGAAACCCAGAGGCATTGACAATAGGGTTCATAGAAGATTCAAGGGCCAGATCT
TGATACCCAACATTGGTTATGGAAGCAACAAAAAAACAAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTGGTCCAC
AACGTCAAGGAGCTGGAAGTGCTGCTGATATGCAACAAATCTTACTGTGCCGAGATCGCTCACAATGTTTCCTCCAAGAA
CTGCAAAGCCATCGTGGAAAGAGCTGCCAACTGGCCATCACAGTCACCAACCCCAATGCCAGGCTGCACAGTGAAGAAAA
TGAG

ORF - retro_nleu_2809 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.12 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHML
MAALRPLVKPKI.KKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRV.RRFKGQIL.PNIGYGSNKKTKHML
RetrocopyMAALRPLVKPKIIKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVHRRFKGQILIPNIGYGSNKKTKHML
ParentalPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAA-QLAIRVTNPNARLRSEENE
PSGFRKFLVHNVKELEVLL.CNKSYCAEIAHNVSSKN.KAIVERAA.QLAI.VTNPNARL.SEENE
RetrocopyPSGFRKFLVHNVKELEVLLICNKSYCAEIAHNVSSKNCKAIVERAA<QLAITVTNPNARLHSEENE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2809 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 109 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000147633 retrocopies
Ailuropoda melanoleuca ENSAMEG0000000458326 retrocopies
Bos taurus ENSBTAG0000001528310 retrocopies
Choloepus hoffmanni ENSCHOG0000001353427 retrocopies
Equus caballus ENSECAG000000072014 retrocopies
Loxodonta africana ENSLAFG000000327371 retrocopy
Macaca mulatta ENSMMUG000000013406 retrocopies
Mustela putorius furoENSMPUG000000171894 retrocopies
Nomascus leucogenys ENSNLEG00000004789 12 retrocopies
Pongo abelii ENSPPYG000000133912 retrocopies
Rattus norvegicus ENSRNOG000000107464 retrocopies
Sarcophilus harrisii ENSSHAG000000127821 retrocopy
Sus scrofa ENSSSCG000000276379 retrocopies



Copyright © RetrogeneDB 2014-2017