Parental gene:

RPS18, ENSSTOG00000002417

Aliases:None
Description:ribosomal protein S18 [Source:HGNC Symbol;Acc:10401]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393286.1:25589774..25594058(-)


>ENSSTOG00000002417
TCTCTAGTGATTCCTGAAAAGTTCCAGCACATTTTGCGAGTACTCAACACAAACATCGATGGGCGGCGGAAAATAGCCTT
TGCCATCACTGCCATTAAGGGTGTGGGGCGAAGGTATGCTCATGTGGTGTTGAGGAAAGCAGACATTGACCTCACCAAGA
GGGCTGGAGAACTCACTGAAGATGAGGTTGAACGTGTGATCACCATTATGCAGAATCCACGACAGTACAAGATCCCAGAC
TGGTTCTTGAACAGACAGAAGGATGTAAAGGATGGAAAATACAGCCAGGTTCTGGCCAATGGTCTAGACAATAAACTCCG
TGAGGACCTAGAGCGACTGAAGAAGATTAGGGCCCACAGGGGACTGCGCCACTTCTGGGGCCTTCGTGTCCGAGGCCAGC
ACACTAAGACCACTGGGCGCCGCGGCCGCACCGTGGGTGTATCTAAGAAGAAATGA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002918 ortholog_one2one 1 retrogene
retro_acar_206,
Ailuropoda melanoleuca ENSAMEG00000001623 ortholog_one2one 2 retrogenes
retro_amel_1617, retro_amel_381,
Cavia porcellus ENSCPOG00000019675 ortholog_one2one 4 retrogenes
retro_cpor_1044, retro_cpor_130, retro_cpor_860, retro_cpor_971,
Felis catus ENSFCAG00000004013 ortholog_one2one 7 retrogenes
retro_fcat_1058, retro_fcat_1536, retro_fcat_166, retro_fcat_222, retro_fcat_313, retro_fcat_327, retro_fcat_430,
Gorilla gorilla ENSGGOG00000006571 possible_ortholog 5 retrogenes
retro_ggor_1496, retro_ggor_2310, retro_ggor_344, retro_ggor_77, retro_ggor_93,
Loxodonta africana ENSLAFG00000032173 possible_ortholog 1 retrogene
retro_lafr_1171,
Myotis lucifugus ENSMLUG00000007360 ortholog_one2one 2 retrogenes
retro_mluc_181, retro_mluc_932,
Macaca mulatta ENSMMUG00000003867 possible_ortholog 1 retrogene
retro_mmul_2198,
Mustela putorius furo ENSMPUG00000002306 ortholog_one2one 6 retrogenes
retro_mputfur_1110, retro_mputfur_1204, retro_mputfur_399, retro_mputfur_687, retro_mputfur_888, retro_mputfur_943,
Oryctolagus cuniculus ENSOCUG00000010546 ortholog_one2one 1 retrogene
retro_ocun_31,
Pongo abelii ENSPPYG00000025953 possible_ortholog 14 retrogenes
retro_pabe_1138, retro_pabe_128, retro_pabe_1481, retro_pabe_1482, retro_pabe_1813, retro_pabe_1881, retro_pabe_2303, retro_pabe_2407, retro_pabe_2663, retro_pabe_2833, retro_pabe_2967, retro_pabe_3013, retro_pabe_3070, retro_pabe_368,
Pan troglodytes ENSPTRG00000018039 possible_ortholog 1 retrogene
retro_ptro_121,
Rattus norvegicus ENSRNOG00000028505 possible_ortholog 4 retrogenes
retro_rnor_102, retro_rnor_234, retro_rnor_29, retro_rnor_70,
Sarcophilus harrisii ENSSHAG00000006857 possible_ortholog 2 retrogenes
retro_shar_265, retro_shar_563,
Sarcophilus harrisii ENSSHAG00000008658 possible_ortholog 1 retrogene
retro_shar_618,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_228 72.22 70.86
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2. retro_itri_397 91.39 100.00
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3. retro_itri_547 70.13 50.33
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4. retro_itri_690 73.75 52.98
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5. retro_itri_742 61.36 58.28
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6. retro_itri_854 84.21 100.00
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7. retro_itri_875 76.47 56.29
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8. retro_itri_878 94.90 64.90
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9. retro_itri_1023 51.02 64.24
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10. retro_itri_1049 71.30 75.50
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11. retro_itri_1121 69.60 80.79
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12. retro_itri_1316 91.45 100.00
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13. retro_itri_1484 55.17 75.50
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Download FASTA sequences of all ENSSTOG00000002417 retrocopies