RetrogeneDB ID: | retro_rnor_29 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:121448707..121449172(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000030107 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps18 | ||
Ensembl ID: | ENSRNOG00000028505 | ||
Aliases: | Rps18, Ke3 | ||
Description: | 40S ribosomal protein S18 [Source:UniProtKB/Swiss-Prot;Acc:P62271] |
Percent Identity: | 98.68 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI | |
Retrocopy | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITI |
Parental | MQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
MQNPRQYKIPDWFLNRQKDVKD.KYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG | |
Retrocopy | MQNPRQYKIPDWFLNRQKDVKDRKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTG |
Parental | RRGRTVGVSKKK |
RRG.TVGVSKKK | |
Retrocopy | RRGHTVGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 30 .99 RPM |
SRP017611_kidney | 0 .42 RPM | 78 .16 RPM |
SRP017611_liver | 0 .27 RPM | 58 .77 RPM |