RetrogeneDB ID: | retro_pabe_2967 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:79977629..79977922(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSPPYG00000025953 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 64.36 % |
Parental protein coverage: | 65.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGE-LTEDEVERVITIMQNPRQYKIPDWFL |
LNTNI.G..K..F.I..IK.V....AHVVL.K..IDL.KR....LTE.EV..VI.IM.NP..YKIPDWFL | |
Retrocopy | LNTNINGWQK--FTISTIKSVR*KHAHVVLGKIEIDLIKRLED<LTEHEVICVIIIMPNPGPYKIPDWFL |
Parental | NRQKDVKDGKYSQVLANGLDNKLREDLERLK |
NRQKDVKDG.YS.VLA.GLDNKL.EDL.... | |
Retrocopy | NRQKDVKDGNYS*VLAKGLDNKLCEDLQQIR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 151 .44 RPM |
SRP007412_cerebellum | 0 .12 RPM | 115 .40 RPM |
SRP007412_heart | 0 .03 RPM | 185 .68 RPM |
SRP007412_kidney | 0 .10 RPM | 391 .53 RPM |
SRP007412_liver | 0 .03 RPM | 335 .61 RPM |