RetrogeneDB ID: | retro_ggor_1496 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 20:5653401..5653856(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSGGOG00000006571 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVER-VIT |
MSLVIPEK.QHIL.VLNTNIDG.RKIAFAI.AIKG...RYA.VVLRKADIDLT.R.GELTED.V...VIT | |
Retrocopy | MSLVIPEKSQHIL*VLNTNIDGHRKIAFAIIAIKGAC*RYAPVVLRKADIDLTERPGELTEDKVDV<VIT |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTT |
.MQNP.Q.KIP.WF.NRQKDVKDGKYSQ.LA.GLDN.L.E.LE.LKKI.AHRGL.HFWGL.V.GQH.KTT | |
Retrocopy | TMQNPCQPKIPHWFSNRQKDVKDGKYSQDLASGLDNNLCENLEQLKKI*AHRGLCHFWGLHVPGQHSKTT |
Parental | GRRGRTVGVSKKK |
GR.G.T.GVSKKK | |
Retrocopy | GRCGHTMGVSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 125 .54 RPM |
SRP007412_cerebellum | 0 .04 RPM | 142 .86 RPM |
SRP007412_heart | 0 .03 RPM | 121 .26 RPM |
SRP007412_kidney | 0 .04 RPM | 338 .93 RPM |
SRP007412_liver | 0 .00 RPM | 403 .61 RPM |
SRP007412_testis | 0 .10 RPM | 256 .51 RPM |