RetrogeneDB ID: | retro_itri_1023 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393359.1:4824415..4824696(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSSTOG00000002417 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 51.02 % |
Parental protein coverage: | 64.24 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KADIDLTKR-AGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLK |
K.D.DL....A..LT....E.VIT..QNP.Q..........Q..VK..K.SQV...GL.NKL..DLE.LK | |
Retrocopy | KTDTDLPME<AIDLTTSKMECVITVVQNPHQ*RLQTGSWIDQR-VKGVKHSQV--RGLNNKLCKDLELLK |
Parental | KIRAHRGLRHFWGLRVRGQHTKTTGRRG |
.I.A.RGL.HFWGL.V...HTK.TGR.G | |
Retrocopy | DILARRGLCHFWGLHVQD*HTKITGRQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002918 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000001623 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000019675 | 4 retrocopies | |
Felis catus | ENSFCAG00000004013 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007360 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002306 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002417 | 13 retrocopies |