RetrogeneDB ID: | retro_itri_228 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393280.1:12612739..12613056(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSSTOG00000002417 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 72.22 % |
Parental protein coverage: | 70.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQN |
VIPEKFQHILR.LNTN..GR.KIAFAITA.K.VGRRYA.VVL.KAD.D.TKRAGELTEDE.E...T.... | |
Retrocopy | VIPEKFQHILRELNTNMNGRWKIAFAITAFKAVGRRYAQVVLGKADTDPTKRAGELTEDEAEP-VTTIMQ |
Parental | PRQYK-IPDWFLNRQKDVKDGKYSQVLANGLDNKLRED |
...Y.....WFLNRQKDVKDG.YSQVLA.GLDNKL.E. | |
Retrocopy | NPLYR<VSEWFLNRQKDVKDGQYSQVLASGLDNKLWEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002918 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000001623 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000019675 | 4 retrocopies | |
Felis catus | ENSFCAG00000004013 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007360 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002306 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002417 | 13 retrocopies |