RetrogeneDB ID: | retro_acar_206 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | LGc:2230073..2230322(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSACAG00000002918 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.54 % |
Parental protein coverage: | 54.61 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTT |
IMQNPR.YKIPDWFLNRQKDVKDGK.SQVLANGL.NKLREDLE.LKKI.AHRGL.HFWGL.V...HTKTT | |
Retrocopy | IMQNPRKYKIPDWFLNRQKDVKDGK*SQVLANGLHNKLREDLEHLKKI*AHRGLHHFWGLSV*RPHTKTT |
Parental | GRRGRTVGVSKKK |
G.RGRTVG.SKKK | |
Retrocopy | GHRGRTVGASKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 1282 .45 RPM |
SRP009831_brain | 0 .00 RPM | 267 .33 RPM |
SRP009831_dewlap | 0 .00 RPM | 354 .83 RPM |
SRP009831_embryo | 0 .00 RPM | 602 .49 RPM |
SRP009831_heart | 0 .00 RPM | 713 .48 RPM |
SRP009831_liver | 0 .00 RPM | 1312 .18 RPM |
SRP009831_lung | 0 .00 RPM | 920 .56 RPM |
SRP009831_ovary | 0 .00 RPM | 270 .91 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 364 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002918 | 1 retrocopy |
retro_acar_206 ,
|
Ailuropoda melanoleuca | ENSAMEG00000001623 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000019675 | 4 retrocopies | |
Felis catus | ENSFCAG00000004013 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000006571 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007360 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000003867 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002306 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010546 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025953 | 14 retrocopies | |
Pan troglodytes | ENSPTRG00000018039 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000028505 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006857 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008658 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002417 | 13 retrocopies |