RetrogeneDB - Parental gene ENSPPYG00000025953 details

							
>ENSPPYG00000025953
ATGTCTCTAGTGATCCCTGAAAAGTTCCAGCATATTTTGCGAGTACTCAACACCAACATCGATGGGCGGCGGAAAATAGC

CTTTGCCATCACTGCCATTAAGGGTGTGGGCCGAAGATATGCTCATGTGGTGTTGAGGAAAGCAGACATTGACCTCACCA

AGAGGGCGGGAGAACTCACTGAGGATGAGGTGGAACGTGTGATCACCATTATGCAGAATCCACGCCAGTACAAGATCCCA

GACTGGTTCTTGAACAGACAGAAGGATGTAAAGGATGGAAAATACAGCCAGGTCCTAGCCAATGGTCTGGACAACAAGCT

GCGTGAAGACCTGGAGCGACTGAAGAAGATTCGGGCCCACAGAGGGCTGCGTCACTTCTGGGGCCTTCGTGTCCGAGGCC

AGCACACCAAGACCACTGGCCGCCGTGGCCGCACCGTGGGTGTGTCCAAGAAGAAATAA

Library	Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex	151 .44 RPM
SRP007412_cerebellum	115 .40 RPM
SRP007412_heart	185 .68 RPM
SRP007412_kidney	391 .53 RPM
SRP007412_liver	335 .61 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Anolis carolinensis	ENSACAG00000002918	possible_ortholog	1 retrogene	retro_acar_206,
Ailuropoda melanoleuca	ENSAMEG00000001623	possible_ortholog	2 retrogenes	retro_amel_1617, retro_amel_381,
Bos taurus	ENSBTAG00000002648	ortholog_one2one	2 retrogenes	retro_btau_1052, retro_btau_614,
Canis familiaris	ENSCAFG00000000950	possible_ortholog	7 retrogenes	retro_cfam_1311, retro_cfam_1607, retro_cfam_2132, retro_cfam_414, retro_cfam_522, retro_cfam_789, retro_cfam_856,
Choloepus hoffmanni	ENSCHOG00000003746	possible_ortholog	5 retrogenes	retro_chof_1248, retro_chof_1727, retro_chof_1768, retro_chof_1968, retro_chof_444,
Callithrix jacchus	ENSCJAG00000021650	ortholog_one2one	5 retrogenes	retro_cjac_22, retro_cjac_245, retro_cjac_2529, retro_cjac_2893, retro_cjac_2955,
Cavia porcellus	ENSCPOG00000019675	possible_ortholog	4 retrogenes	retro_cpor_1044, retro_cpor_130, retro_cpor_860, retro_cpor_971,
Dasypus novemcinctus	ENSDNOG00000012084	ortholog_one2one	13 retrogenes	retro_dnov_1295, retro_dnov_1398, retro_dnov_1448, retro_dnov_1675, retro_dnov_1770, retro_dnov_2008, retro_dnov_2115, retro_dnov_2223, retro_dnov_2288, retro_dnov_327, retro_dnov_363, retro_dnov_384, retro_dnov_399,
Dipodomys ordii	ENSDORG00000013825	possible_ortholog	6 retrogenes	retro_dord_185, retro_dord_326, retro_dord_426, retro_dord_481, retro_dord_50, retro_dord_772,
Erinaceus europaeus	ENSEEUG00000010297	ortholog_one2one	8 retrogenes	retro_eeur_201, retro_eeur_261, retro_eeur_380, retro_eeur_460, retro_eeur_473, retro_eeur_498, retro_eeur_667, retro_eeur_689,
Felis catus	ENSFCAG00000004013	possible_ortholog	7 retrogenes	retro_fcat_1058, retro_fcat_1536, retro_fcat_166, retro_fcat_222, retro_fcat_313, retro_fcat_327, retro_fcat_430,
Homo sapiens	ENSG00000231500	ortholog_one2one	2 retrogenes	retro_hsap_1806, retro_hsap_1974,
Gorilla gorilla	ENSGGOG00000006571	ortholog_one2one	5 retrogenes	retro_ggor_1496, retro_ggor_2310, retro_ggor_344, retro_ggor_77, retro_ggor_93,
Loxodonta africana	ENSLAFG00000032173	possible_ortholog	1 retrogene	retro_lafr_1171,
Macropus eugenii	ENSMEUG00000016770	ortholog_one2one	11 retrogenes	retro_meug_1296, retro_meug_1737, retro_meug_1807, retro_meug_1946, retro_meug_212, retro_meug_310, retro_meug_344, retro_meug_387, retro_meug_566, retro_meug_625, retro_meug_627,
Myotis lucifugus	ENSMLUG00000007360	possible_ortholog	2 retrogenes	retro_mluc_181, retro_mluc_932,
Macaca mulatta	ENSMMUG00000003867	possible_ortholog	1 retrogene	retro_mmul_2198,
Monodelphis domestica	ENSMODG00000014210	possible_ortholog	4 retrogenes	retro_mdom_1041, retro_mdom_1286, retro_mdom_1514, retro_mdom_642,
Mustela putorius furo	ENSMPUG00000002306	possible_ortholog	6 retrogenes	retro_mputfur_1110, retro_mputfur_1204, retro_mputfur_399, retro_mputfur_687, retro_mputfur_888, retro_mputfur_943,
Mus musculus	ENSMUSG00000008668	possible_ortholog	2 retrogenes	retro_mmus_57, retro_mmus_66,
Nomascus leucogenys	ENSNLEG00000006840	possible_ortholog	10 retrogenes	retro_nleu_1074, retro_nleu_1161, retro_nleu_1176, retro_nleu_1466, retro_nleu_219, retro_nleu_2572, retro_nleu_2616, retro_nleu_525, retro_nleu_60, retro_nleu_737,
Oryctolagus cuniculus	ENSOCUG00000010546	possible_ortholog	1 retrogene	retro_ocun_31,
Otolemur garnettii	ENSOGAG00000006225	ortholog_one2one	7 retrogenes	retro_ogar_1498, retro_ogar_1832, retro_ogar_2372, retro_ogar_472, retro_ogar_608, retro_ogar_709, retro_ogar_905,
Procavia capensis	ENSPCAG00000005854	possible_ortholog	2 retrogenes	retro_pcap_235, retro_pcap_319,
Pan troglodytes	ENSPTRG00000018039	ortholog_one2one	1 retrogene	retro_ptro_121,
Pteropus vampyrus	ENSPVAG00000001902	ortholog_one2one	6 retrogenes	retro_pvam_295, retro_pvam_556, retro_pvam_691, retro_pvam_708, retro_pvam_829, retro_pvam_875,
Rattus norvegicus	ENSRNOG00000028505	possible_ortholog	4 retrogenes	retro_rnor_102, retro_rnor_234, retro_rnor_29, retro_rnor_70,
Sarcophilus harrisii	ENSSHAG00000006857	possible_ortholog	2 retrogenes	retro_shar_265, retro_shar_563,
Sarcophilus harrisii	ENSSHAG00000008658	possible_ortholog	1 retrogene	retro_shar_618,
Sus scrofa	ENSSSCG00000001502	ortholog_one2one	5 retrogenes	retro_sscr_112, retro_sscr_156, retro_sscr_157, retro_sscr_2, retro_sscr_831,
Ictidomys tridecemlineatus	ENSSTOG00000002417	possible_ortholog	13 retrogenes	retro_itri_1023, retro_itri_1049, retro_itri_1121, retro_itri_1316, retro_itri_1484, retro_itri_228, retro_itri_397, retro_itri_547, retro_itri_690, retro_itri_742, retro_itri_854, retro_itri_875, retro_itri_878,
Tupaia belangeri	ENSTBEG00000012708	ortholog_one2one	40 retrogenes	retro_tbel_1070, retro_tbel_1739, retro_tbel_1745, retro_tbel_1806, retro_tbel_1818, retro_tbel_1827, retro_tbel_1855, retro_tbel_205, retro_tbel_2087, retro_tbel_211, retro_tbel_2299, retro_tbel_2309, retro_tbel_2312, retro_tbel_234, retro_tbel_2364, retro_tbel_2424, retro_tbel_2473, retro_tbel_250, retro_tbel_2682, retro_tbel_2768, retro_tbel_295, retro_tbel_3189, retro_tbel_3317, retro_tbel_3383, retro_tbel_3625, retro_tbel_363, retro_tbel_3686, retro_tbel_3731, retro_tbel_3870, retro_tbel_4100, retro_tbel_4215, retro_tbel_4365, retro_tbel_45, retro_tbel_4562, retro_tbel_4578, retro_tbel_462, retro_tbel_57, retro_tbel_578, retro_tbel_856, retro_tbel_941,
Tursiops truncatus	ENSTTRG00000004302	ortholog_one2one	3 retrogenes	retro_ttru_1012, retro_ttru_1553, retro_ttru_837,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_pabe_128	95.39	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_pabe_368	77.67	67.11	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_pabe_1138	85.53	100.00	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_pabe_1481	94.74	100.00	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_pabe_1482	88.41	89.47	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_pabe_1813	77.42	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_pabe_1881	83.64	72.37	Please wait, loading	Please wait, loading	Please wait, loading
8.	retro_pabe_2303	68.63	100.00	Please wait, loading	Please wait, loading	Please wait, loading
9.	retro_pabe_2407	68.63	100.00	Please wait, loading	Please wait, loading	Please wait, loading
10.	retro_pabe_2663	73.03	100.00	Please wait, loading	Please wait, loading	Please wait, loading
11.	retro_pabe_2833	78.85	68.42	Please wait, loading	Please wait, loading	Please wait, loading
12.	retro_pabe_2967	64.36	65.79	Please wait, loading	Please wait, loading	Please wait, loading
13.	retro_pabe_3013	82.76	57.24	Please wait, loading	Please wait, loading	Please wait, loading
14.	retro_pabe_3070	84.87	100.00	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSPPYG00000025953 retrocopies

Parental gene:	RPS18, ENSPPYG00000025953
Aliases:	None
Description:	ribosomal protein S18 [Source:HGNC Symbol;Acc:10401]
Organism:	*Orangutan (Pongo abelii)*
Coordinates:	6_qbl_hap2:1111949..1116347(+)

Parental gene:

RPS18, ENSPPYG00000025953