Parental gene:

BTF3L4, ENSSTOG00000006129

Aliases:None
Description:basic transcription factor 3-like 4 [Source:HGNC Symbol;Acc:30547]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393332.1:8730599..8876751(-)


>ENSSTOG00000006129
ATGAATCAAGAAAAGTTAGCCAAACTTCAGGCTCAGGTCCGGATAGGGGGCAAGGGCACAGCTCGCAGAAAGAAGAAGGT
GGTACATAGAACAGCTACAGCTGATGACAAAAAGCTTCAGAGTTCTCTAAAAAAACTGGCTGTGAATAATATAGCTGGTA
TTGAAGAGGTGAACATGATTAAAGATGATGGGACAGTTATTCATTTCAACAATCCCAAAGTCCAAGCTTCCCTGTCTGCC
AATACCTTCGCAATTACTGGTCATGCAGAAGCCAAACCAATCACAGAAATGCTTCCTGGAATATTAAGTCAGCTTGGTGC
TGACAGCTTAACGAGCCTTAGAAAGTTAGCTGAACAGTTCCCACGGCAAGTGTTGGACAGTAAAGCACCAAAACCAGAAG
ACATTGATGAAGAGGATGATGATGTTCCAGATCTCGTAGAAAATTTTGATGAAGCATCAAAGAATGAAGCTAACTAA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000021582 possible_ortholog 4 retrogenes
retro_cjac_2000, retro_cjac_2929, retro_cjac_4160, retro_cjac_451,
Cavia porcellus ENSCPOG00000004006 ortholog_one2one 1 retrogene
retro_cpor_908,
Ciona savignyi ENSCSAVG00000009653 ortholog_one2many 1 retrogene
retro_csav_25,
Dasypus novemcinctus ENSDNOG00000003181 ortholog_one2one 4 retrogenes
retro_dnov_1690, retro_dnov_1928, retro_dnov_2672, retro_dnov_921,
Echinops telfairi ENSETEG00000011923 ortholog_one2one 11 retrogenes
retro_etel_1017, retro_etel_1167, retro_etel_1207, retro_etel_1409, retro_etel_1990, retro_etel_2113, retro_etel_2203, retro_etel_291, retro_etel_663, retro_etel_804, retro_etel_953,
Loxodonta africana ENSLAFG00000016124 ortholog_one2one 3 retrogenes
retro_lafr_206, retro_lafr_769, retro_lafr_947,
Macropus eugenii ENSMEUG00000006135 ortholog_one2one 10 retrogenes
retro_meug_1114, retro_meug_1164, retro_meug_1333, retro_meug_1395, retro_meug_1512, retro_meug_1663, retro_meug_2008, retro_meug_298, retro_meug_903, retro_meug_966,
Myotis lucifugus ENSMLUG00000016884 possible_ortholog 1 retrogene
retro_mluc_912,
Macaca mulatta ENSMMUG00000003636 possible_ortholog 1 retrogene
retro_mmul_59,
Monodelphis domestica ENSMODG00000000770 ortholog_one2many 2 retrogenes
retro_mdom_33, retro_mdom_992,
Mus musculus ENSMUSG00000028568 ortholog_one2one 2 retrogenes
retro_mmus_1134, retro_mmus_2743,
Oryctolagus cuniculus ENSOCUG00000001517 possible_ortholog 3 retrogenes
retro_ocun_1001, retro_ocun_1412, retro_ocun_1912,
Otolemur garnettii ENSOGAG00000030256 possible_ortholog 2 retrogenes
retro_ogar_2759, retro_ogar_570,
Procavia capensis ENSPCAG00000006428 ortholog_one2one 3 retrogenes
retro_pcap_129, retro_pcap_307, retro_pcap_373,
Pongo abelii ENSPPYG00000001353 possible_ortholog 2 retrogenes
retro_pabe_1850, retro_pabe_3010,
Rattus norvegicus ENSRNOG00000008512 ortholog_one2one 8 retrogenes
retro_rnor_1113, retro_rnor_1666, retro_rnor_1870, retro_rnor_1871, retro_rnor_1872, retro_rnor_537, retro_rnor_760, retro_rnor_998,
Tarsius syrichta ENSTSYG00000013635 ortholog_one2one 3 retrogenes
retro_tsyr_1576, retro_tsyr_1822, retro_tsyr_2045,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_402 57.94 66.46
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2. retro_itri_459 67.92 100.00
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3. retro_itri_541 73.57 88.61
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4. retro_itri_701 68.54 55.06
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5. retro_itri_810 74.79 74.05
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6. retro_itri_1309 52.55 85.44
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Download FASTA sequences of all ENSSTOG00000006129 retrocopies