RetrogeneDB ID: | retro_btau_1307 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:10402701..10403009(+) | ||
Located in intron of: | ENSBTAG00000012456 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2V1 | ||
Ensembl ID: | ENSBTAG00000027316 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 variant 1 [Source:UniProtKB/Swiss-Prot;Acc:Q3SZ52] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 69.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP-FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN- |
TR.TGMI.GPPRTIYEN.IY.LKIEC.PKYPEAP..FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN. | |
Retrocopy | TRRTGMITGPPRTIYEN*IYKLKIECVPKYPEAPLLFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQN< |
Parental | SYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN |
.YS.KVVLQEL..LMMSKENMKLPQ.PEGQCYSN | |
Retrocopy | FYSVKVVLQELQCLMMSKENMKLPQLPEGQCYSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 63 .52 RPM |
ERP005899_muscle | 0 .00 RPM | 80 .24 RPM |
SRP017611_brain | 0 .05 RPM | 79 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 123 .88 RPM |
SRP017611_liver | 0 .00 RPM | 48 .10 RPM |
SRP030211_testis | 0 .02 RPM | 145 .47 RPM |