RetrogeneDB ID: | retro_cfam_709 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 16:41542694..41543056(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSCAFG00000006992 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 71.77 % |
Parental protein coverage: | 66.85 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | TILYRLQVGEVVTTIPTIGFNVETVTYKNLK-FQVWDLGGQTSIRPYWRCYYSNTDAVI-YVVDSCDRDR |
T.LYRL..GEVVTTIPT.GF.VE.VTYK.LK.FQVW.LGG.TSIRPYW.CYYSNTDA.I..V..SCD.DR | |
Retrocopy | TLLYRL*IGEVVTTIPTTGFKVESVTYKSLK>FQVWELGGETSIRPYWECYYSNTDAII<LVAGSCDGDR |
Parental | IGISKSELVAMLEEEELRKAILVVFANK-QDMEQAMTPSEMANSLGLPALKDRK |
IGISK.ELV..LEEEELRKAIL.VFA....DMEQAMT.SEM.NS......K..K | |
Retrocopy | IGISK*ELVVTLEEEELRKAILEVFASE<TDMEQAMTLSEMTNSFEFLVWKESK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 27 .09 RPM |
SRP017611_brain | 0 .00 RPM | 27 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 47 .81 RPM |
SRP017611_liver | 0 .00 RPM | 11 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016452 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006992 | 2 retrocopies |
retro_cfam_1176, retro_cfam_709 ,
|
Callithrix jacchus | ENSCJAG00000001966 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020310 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015525 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002351 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011822 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060904 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002217 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000015144 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008119 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005763 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013944 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004634 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016022 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013257 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000017202 | 1 retrocopy |