RetrogeneDB ID: | retro_shar_204 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL834648.1:1188494..1188849(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSSHAG00000004634 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 89.08 % |
Parental protein coverage: | 65.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GGFFSTIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTYKNLKFQVWDLGG |
G.FFSTIFSSLFGT.EMRILIL.LD.AGKTTILYR.Q.GEVV.TTI.TIGFNVETVTYK.LKFQVWDLGG | |
Retrocopy | GNFFSTIFSSLFGTWEMRILILELDEAGKTTILYRIQIGEVV>TTILTIGFNVETVTYKTLKFQVWDLGG |
Parental | QTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGVSKSELVAMLEEEELRKA |
QTSIRPYW.CYYSNTDAVIYV.DSCD.D.IGVSKSELVAMLEEEELRKA | |
Retrocopy | QTSIRPYW*CYYSNTDAVIYVIDSCD*DPIGVSKSELVAMLEEEELRKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016452 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006992 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001966 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020310 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015525 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002351 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011822 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060904 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002217 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000015144 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008119 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005763 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013944 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004634 | 2 retrocopies |
retro_shar_204 , retro_shar_275,
|
Ictidomys tridecemlineatus | ENSSTOG00000016022 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013257 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000017202 | 1 retrocopy |