RetrogeneDB ID: | retro_sara_71 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_1985:581558..581935(+) | ||
Located in intron of: | ENSSARG00000009929 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSSARG00000013944 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 84.25 % |
Parental protein coverage: | 70.39 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFA |
VT.KNLKFQV.DLGGQT.IRPYWRCYYSNTDAVI.VVDSCD.DR.GISKSE.VAMLE.EELRKAILV.FA | |
Retrocopy | VTHKNLKFQV*DLGGQTNIRPYWRCYYSNTDAVICVVDSCD*DRVGISKSEMVAMLEKEELRKAILVMFA |
Parental | NKQDMEQAMTPSEMANSL-GLPALKDRKWQIFKTSATKGTGLDEAMEWTLETLKSRQ |
NKQDM.QAMTP..MANSL.GLPA..DRKWQIFK.SATKGTGL.EAMEW..ETLKS.Q | |
Retrocopy | NKQDMVQAMTPLGMANSL<GLPASNDRKWQIFKISATKGTGLSEAMEWLVETLKS*Q |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016452 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006992 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001966 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020310 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015525 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002351 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011822 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060904 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002217 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000015144 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008119 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005763 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013944 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004634 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016022 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013257 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000017202 | 1 retrocopy |