Parental gene:

ARL1, ENSCJAG00000001966

Aliases:None
Description:ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:91546440..91564462(-)


>ENSCJAG00000001966
ATGGGTGGCTTTTTCTCAAGTATATTTTCCAGTTTGTTTGGAACTCGGGAAATGAGGATTTTAATTTTGGGATTAGATGG
AGCAGGAAAAACCACGATTTTGTACAGATTACAAGTTGGAGAAGTTGTTACTACTATACCTACCATTGGATTTAATGTAG
AGACGGTGACATACAAAAACCTTAAATTCCAAGTCTGGGATTTAGGAGGACAGACGAGTATCAGGCCATACTGGAGATGT
TACTATTCAAACACAGATGCAGTCATATATGTAGTAGACAGTTGCGACCGAGACCGAATTGGCATATCCAAATCAGAGTT
AGTTGCCATGTTGGAGGAAGAAGAGCTGAGAAAAGCCATTTTAGTGGTGTTTGCAAATAAACAGGACATGGAACAGGCCA
TGACTCCATCAGAGATGGCAAATTCACTTGGGCTACCTGCCTTGAAGGACCGAAAATGGCAGATATTCAAAACATCAGCA
ACCAAAGGCACTGGCCTTGATGAGGCAATGGAATGGTTAGTTGAAACATTAAAAAGCAGACAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 41 .18 RPM
SRP051959_skeletal_muscle 42 .89 RPM
SRP051959_lymph_node 29 .11 RPM
SRP051959_lung 35 .93 RPM
SRP051959_liver 36 .15 RPM
SRP051959_kidney 51 .29 RPM
SRP051959_heart 41 .41 RPM
SRP051959_colon 38 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016452 ortholog_one2one 2 retrogenes
retro_amel_1138, retro_amel_713,
Canis familiaris ENSCAFG00000006992 ortholog_one2one 2 retrogenes
retro_cfam_1176, retro_cfam_709,
Callithrix jacchus ENSCJAG00000003311 within_species_paralog 9 retrogenes
retro_cjac_1054, retro_cjac_1111, retro_cjac_1255, retro_cjac_1921, retro_cjac_2949, retro_cjac_3920, retro_cjac_4131, retro_cjac_4175, retro_cjac_4211,
Echinops telfairi ENSETEG00000020310 ortholog_one2one 1 retrogene
retro_etel_1850,
Macropus eugenii ENSMEUG00000015525 ortholog_one2one 1 retrogene
retro_meug_518,
Myotis lucifugus ENSMLUG00000002351 ortholog_one2many 1 retrogene
retro_mluc_255,
Monodelphis domestica ENSMODG00000003056 ortholog_one2one 1 retrogene
retro_mdom_677,
Mustela putorius furo ENSMPUG00000011822 ortholog_one2one 1 retrogene
retro_mputfur_1458,
Mus musculus ENSMUSG00000060904 ortholog_one2one 1 retrogene
retro_mmus_3285,
Oryctolagus cuniculus ENSOCUG00000002217 ortholog_one2one 5 retrogenes
retro_ocun_1608, retro_ocun_399, retro_ocun_400, retro_ocun_465, retro_ocun_847,
Otolemur garnettii ENSOGAG00000015144 ortholog_one2one 1 retrogene
retro_ogar_1239,
Pteropus vampyrus ENSPVAG00000008119 ortholog_one2one 2 retrogenes
retro_pvam_1072, retro_pvam_715,
Rattus norvegicus ENSRNOG00000005763 ortholog_one2one 1 retrogene
retro_rnor_2375,
Sorex araneus ENSSARG00000013944 ortholog_one2one 4 retrogenes
retro_sara_237, retro_sara_304, retro_sara_479, retro_sara_71,
Sarcophilus harrisii ENSSHAG00000004634 ortholog_one2one 2 retrogenes
retro_shar_204, retro_shar_275,
Ictidomys tridecemlineatus ENSSTOG00000016022 ortholog_one2one 2 retrogenes
retro_itri_1000, retro_itri_348,
Tarsius syrichta ENSTSYG00000013257 ortholog_one2one 5 retrogenes
retro_tsyr_1803, retro_tsyr_188, retro_tsyr_350, retro_tsyr_369, retro_tsyr_809,
Tursiops truncatus ENSTTRG00000017202 ortholog_one2one 1 retrogene
retro_ttru_701,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2938 72.38 100.00
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Download FASTA sequences of all ENSCJAG00000001966 retrocopies