RetrogeneDB ID: | retro_tsyr_369 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_104708:5397..5904(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSTSYG00000013257 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 84.02 % |
Parental protein coverage: | 94.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | GFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQT |
GFF.SIFSSLFGT.EMRILILG.D.AGKTTILYRLQ.GEV.T..PTIGFN.E.VT..NLKFQVWDLGGQT | |
Retrocopy | GFF*SIFSSLFGTPEMRILILGSDEAGKTTILYRLQIGEVMTAVPTIGFNAEMVTSQNLKFQVWDLGGQT |
Parental | SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANS |
SIRPYW.CY.SN.DAVIYVVDSCD.DR.GIS.SELVAMLEEE.LRKAILVV.ANKQD.E.AMTPSEMANS | |
Retrocopy | SIRPYWKCYHSNIDAVIYVVDSCD*DRTGISTSELVAMLEEEDLRKAILVVSANKQDIELAMTPSEMANS |
Parental | LGLPALKDRKWQIFKTSATKGTGLDEAME |
LGLPALK.R.W.IFKTSATKGTG..EAME | |
Retrocopy | LGLPALKNR*WLIFKTSATKGTGFHEAME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016452 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006992 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001966 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020310 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015525 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002351 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011822 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060904 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002217 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000015144 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008119 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005763 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013944 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004634 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016022 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013257 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000017202 | 1 retrocopy |