RetrogeneDB ID: | retro_pvam_715 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | GeneScaffold_939:23827..24324(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSPVAG00000008119 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 74.85 % |
Parental protein coverage: | 86.91 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNT |
.EMRILILGLD.A..TT.LYRL..GE.VT.IPTI.FNVE.VTY.NLKF.VWDL.GQ.SIR.YWRCYY.NT | |
Retrocopy | QEMRILILGLDVARNTTVLYRLEAGEGVTAIPTIEFNVEMVTYENLKF*VWDLAGQPSIRSYWRCYY*NT |
Parental | DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQI |
.A.IYVVDSCD.DR.G.SKSE..AMLEEEELRK.I.VVFANK.DMEQ...PSEMA.SLGL..LKD.KWQI | |
Retrocopy | GAAIYVVDSCD*DRTGVSKSE*IAMLEEEELRKVISVVFANKEDMEQDTAPSEMAHSLGLLVLKDGKWQI |
Parental | FKTSATKGTGLDEAMEWLVE-TLKSRQ |
.KTSATKGTGL.E...WL.E..LKSRQ | |
Retrocopy | LKTSATKGTGLEETTKWLME<RLKSRQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016452 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006992 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001966 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020310 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015525 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002351 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011822 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060904 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002217 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000015144 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008119 | 2 retrocopies |
retro_pvam_1072, retro_pvam_715 ,
|
Rattus norvegicus | ENSRNOG00000005763 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013944 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004634 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016022 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013257 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000017202 | 1 retrocopy |