RetrogeneDB ID: | retro_cfam_1176 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 25:7222400..7222930(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARL1 | ||
Ensembl ID: | ENSCAFG00000006992 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor-like 1 [Source:HGNC Symbol;Acc:692] |
Percent Identity: | 72.53 % |
Parental protein coverage: | 97.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | MGGFFSSIFSSL-FGT-REMRILILGLDGAGK-TTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWD |
MGGF.S.I.SSL.FGT..EMRILIL.L.GAGK...ILYRLQVGEVVTTIPTIGFNV.TV.Y.NLK.QVWD | |
Retrocopy | MGGFLSNILSSL>FGT>QEMRILILRLYGAGK<NVILYRLQVGEVVTTIPTIGFNVGTVIYENLKSQVWD |
Parental | LGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRI-GISKSELVAMLEEEELRKAILVVFANKQDMEQAMTP |
.GGQT...PYWRC.YSNTD.V...VDSCDR....GI..SELVAMLE.EELRKAILVVF.NKQ.M.QA.TP | |
Retrocopy | *GGQTRLMPYWRCHYSNTDTVVSIVDSCDRTKL<GIPTSELVAMLEKEELRKAILVVFTNKQGMQQAVTP |
Parental | SEM-ANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL |
.EM.ANSL.LPALKD...QI.K.SAT..TG..EAM.WL..TL | |
Retrocopy | LEM<ANSLELPALKDPQRQICKPSATQVTGFNEAMRWLAGTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 27 .09 RPM |
SRP017611_brain | 0 .00 RPM | 27 .07 RPM |
SRP017611_kidney | 0 .07 RPM | 47 .81 RPM |
SRP017611_liver | 0 .00 RPM | 11 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016452 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000006992 | 2 retrocopies |
retro_cfam_1176 , retro_cfam_709,
|
Callithrix jacchus | ENSCJAG00000001966 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020310 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015525 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002351 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003056 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000011822 | 1 retrocopy | |
Mus musculus | ENSMUSG00000060904 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002217 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000015144 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008119 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005763 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013944 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004634 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000016022 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013257 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000017202 | 1 retrocopy |