RetrogeneDB ID: | retro_chof_1120 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_204730:3261..3735(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000012471 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.63 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | TPGVGKTTLGKELASRSGLKYINVGDLAKEGQLYDGYDEEYDCPILDEDRVVDELENQMKEGGVIVDYHG |
TP.VG....GKEL.S.SGLKY..VG.LAKEGQLY.G.DE.YD.PILDED.VV.ELENQMKEG...VDYHG | |
Retrocopy | TPEVGEAI*GKELGSGSGLKYSDVGYLAKEGQLYGGSDEKYDYPILDEDTVVGELENQMKEGRG-VDYHG |
Parental | CD-FFPERWFHIVFVLRTDNGVLYKRLETRGYSEKKLQDNIQCEIFQVLYEEAMASYREEIVHQLPSNNP |
.D.F.P.R.....F.....N.VL.K....R.YSEKKLQDN.QCE.FQVLYEEA.ASYRE.IV..L.S.N. | |
Retrocopy | SD<FLP*RLVSYSFC--AENSVLHK*I*SRVYSEKKLQDNTQCENFQVLYEEAIASYREKIVYPL-SSNN |
Parental | EEL-ENNINQILKWIEQWIKDNNS |
.E...N..NQILKWIEQ.IKD..S | |
Retrocopy | PEE>QNDRNQILKWIEQ*IKDHSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012471 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000036421 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000024524 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015545 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016022 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000028932 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019421 | 14 retrocopies | |
Mustela putorius furo | ENSMPUG00000014588 | 1 retrocopy | |
Mus musculus | ENSMUSG00000078941 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004086 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000020970 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027736 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015527 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016949 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000039848 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017216 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024448 | 2 retrocopies |