RetrogeneDB ID:

retro_mputfur_830

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL896953.1:2364877..2365402(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMPUG00000019820
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:Taf9
Ensembl ID:ENSMPUG00000014588
Aliases:None
Description:TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:MGI Symbol;Acc:MGI:1888697]


Retrocopy-Parental alignment summary:






>retro_mputfur_830
GTGAGGACCATGTTGCTTCCGAACATCCTACTCACCGGTACACCAGGGGTTGGAAAAACCATGCTAGGCAAAGGACTTGC
ATCAAGATCAGGACTGAAATACATTAATGTGGGTGATTTAGCTCGAGAAGGGCAGTTATATGATGGCTATGATGAAGAGT
ATGAATGCCCCATTTTAGATGAAGATAGAGTAGTTGATGAATTGGAAAGCCAAATGAGTGAAGGTGGAGTTATTGTTGAT
TACAATGGTTGTGATTTCTTCCCTGAACGCTGGTTTCATACAGTTTTTGTGCTGCAAGCAGATAACAGTGTATTGTACAA
AAGACTTGAAACAAGGGGTTATAATGAAAAGAAACTAAAAGACAATATTCAGTGTGAAATTTTTCAAATTCTTTATGAAG
AAGCATTAGCATCTTACAAGGAAGAAATAGTACATCAACTGCCCAGCAATAAACCAGAAGATCTAGAAGATAATATCAAT
CAGATATTGAAGTGGATTAAGCAGTGGATCAAGGATCATAGGTCC

ORF - retro_mputfur_830 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVRTMLLPNILLTGTPGVGKTTLGKELASRSGLKYINVGDLAREGQLYDGYDEEYECPILDEDRVVDELES
VRTMLLPNILLTGTPGVGKT.LGK.LASRSGLKYINVGDLAREGQLYDGYDEEYECPILDEDRVVDELES
RetrocopyVRTMLLPNILLTGTPGVGKTMLGKGLASRSGLKYINVGDLAREGQLYDGYDEEYECPILDEDRVVDELES
ParentalQMSEGGVIVDYHGCDFFPERWFHIVFVLQADNSVLYKRLETRGYNEKKLKDNIQCEIFQVLYEEALASYK
QMSEGGVIVDY.GCDFFPERWFH.VFVLQADNSVLYKRLETRGYNEKKLKDNIQCEIFQ.LYEEALASYK
RetrocopyQMSEGGVIVDYNGCDFFPERWFHTVFVLQADNSVLYKRLETRGYNEKKLKDNIQCEIFQILYEEALASYK
ParentalEEIVHQLPSNKPEDLEDNINQILKWIEQWIKDHSS
EEIVHQLPSNKPEDLEDNINQILKWI.QWIKDH.S
RetrocopyEEIVHQLPSNKPEDLEDNINQILKWIKQWIKDHRS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_830 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_830 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 17 parental genes, and 67 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000124714 retrocopies
retro_chof_1120, retro_chof_1976, retro_chof_734, retro_chof_84,
Callithrix jacchus ENSCJAG000000364211 retrocopy
retro_cjac_3025,
Dasypus novemcinctus ENSDNOG000000245243 retrocopies
retro_dnov_1274, retro_dnov_2010, retro_dnov_398,
Gorilla gorilla ENSGGOG000000155451 retrocopy
retro_ggor_864,
Macropus eugenii ENSMEUG0000001602212 retrocopies
retro_meug_1043, retro_meug_132, retro_meug_134, retro_meug_1480, retro_meug_1547, retro_meug_1622, retro_meug_284, retro_meug_332, retro_meug_364, retro_meug_427, retro_meug_722, retro_meug_897,
Myotis lucifugus ENSMLUG000000289324 retrocopies
retro_mluc_1134, retro_mluc_1330, retro_mluc_1661, retro_mluc_458,
Monodelphis domestica ENSMODG0000001942114 retrocopies
retro_mdom_1016, retro_mdom_1136, retro_mdom_1204, retro_mdom_1430, retro_mdom_1826, retro_mdom_1827, retro_mdom_2023, retro_mdom_409, retro_mdom_459, retro_mdom_519, retro_mdom_55, retro_mdom_666, retro_mdom_845, retro_mdom_913,
Mustela putorius furoENSMPUG00000014588 1 retrocopy
retro_mputfur_830 ,
Mus musculus ENSMUSG000000789412 retrocopies
retro_mmus_3717, retro_mmus_814,
Nomascus leucogenys ENSNLEG000000040862 retrocopies
retro_nleu_2237, retro_nleu_2670,
Oryctolagus cuniculus ENSOCUG000000209701 retrocopy
retro_ocun_6,
Otolemur garnettii ENSOGAG000000277364 retrocopies
retro_ogar_1080, retro_ogar_2051, retro_ogar_3344, retro_ogar_876,
Pongo abelii ENSPPYG000000155273 retrocopies
retro_pabe_3298, retro_pabe_483, retro_pabe_835,
Pan troglodytes ENSPTRG0000001694910 retrocopies
retro_ptro_138, retro_ptro_2726, retro_ptro_3286, retro_ptro_3291, retro_ptro_3299, retro_ptro_3301, retro_ptro_3303, retro_ptro_3306, retro_ptro_3308, retro_ptro_761,
Rattus norvegicus ENSRNOG000000398481 retrocopy
retro_rnor_280,
Sarcophilus harrisii ENSSHAG000000172162 retrocopies
retro_shar_451, retro_shar_511,
Ictidomys tridecemlineatus ENSSTOG000000244482 retrocopies
retro_itri_1475, retro_itri_995,


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