RetrogeneDB ID: | retro_ggor_864 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:35735007..35735483(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000185057 | ||
Ensembl ID: | ENSGGOG00000015545 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.75 % |
Parental protein coverage: | 92.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDN-QM |
MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL..EE..YDGYDEEYDCPILDEDRVVDELDN.QM | |
Retrocopy | MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLS*EEKSYDGYDEEYDCPILDEDRVVDELDN<QM |
Parental | REGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEE |
REGGVIVDYHGCDFFP.RWFHIVFVLRTDTNVLYERLETRGYN.K.LTDNIQCEIFQVLYEEAT.S.KEE | |
Retrocopy | REGGVIVDYHGCDFFPKRWFHIVFVLRTDTNVLYERLETRGYNGKTLTDNIQCEIFQVLYEEATTSHKEE |
Parental | IVHQLPSNKPEELENNVDQI |
IVHQLPSNKPEELENNVDQI | |
Retrocopy | IVHQLPSNKPEELENNVDQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 7 .91 RPM |
SRP007412_cerebellum | 0 .04 RPM | 5 .99 RPM |
SRP007412_heart | 0 .00 RPM | 1 .81 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .00 RPM |
SRP007412_liver | 0 .00 RPM | 5 .62 RPM |
SRP007412_testis | 0 .00 RPM | 21 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012471 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000036421 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000024524 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015545 | 1 retrocopy |
retro_ggor_864 ,
|
Macropus eugenii | ENSMEUG00000016022 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000028932 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019421 | 14 retrocopies | |
Mustela putorius furo | ENSMPUG00000014588 | 1 retrocopy | |
Mus musculus | ENSMUSG00000078941 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004086 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000020970 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027736 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015527 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016949 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000039848 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017216 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024448 | 2 retrocopies |