RetrogeneDB ID: | retro_rnor_280 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:28969825..28970344(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000026813 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF9 | ||
Ensembl ID: | ENSRNOG00000039848 | ||
Aliases: | Ak6, AK/ATPase | ||
Description: | Adenylate kinase isoenzyme 6 [Source:UniProtKB/Swiss-Prot;Acc:Q5EB68] |
Percent Identity: | 98.83 % |
Parental protein coverage: | 99.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KLPNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGHLYDGYDEEYGCPILDEDRVVDELEPQMTE |
K.PNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGHLYDGYDEEYGCPILDEDRVVDELEPQMTE | |
Retrocopy | KTPNILLTGTPGVGKTTLGKELASRSGLKYVNVGDLAREGHLYDGYDEEYGCPILDEDRVVDELEPQMTE |
Parental | GGVIVDYHGCDFFPERWFHIVFVLRTDNGILYKRLETRGYHEKKLQDNIQCEIFQVLYEEAMASYKEEIV |
GGVIVDYHGCDFFPERWFHIVFVLRTDNGILYKRLETRGYHEKKLQDNIQCEIFQVLYEEAMASYKEEIV | |
Retrocopy | GGVIVDYHGCDFFPERWFHIVFVLRTDNGILYKRLETRGYHEKKLQDNIQCEIFQVLYEEAMASYKEEIV |
Parental | HQLPSNEPEQLEDNINQISKWIEQWVKDHNP |
HQLPSNEPEQLEDNINQ.SKWIEQWVKDHNP | |
Retrocopy | HQLPSNEPEQLEDNINQTSKWIEQWVKDHNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 14 .59 RPM |
SRP017611_kidney | 0 .21 RPM | 12 .91 RPM |
SRP017611_liver | 0 .34 RPM | 5 .65 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012471 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000036421 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000024524 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015545 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016022 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000028932 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019421 | 14 retrocopies | |
Mustela putorius furo | ENSMPUG00000014588 | 1 retrocopy | |
Mus musculus | ENSMUSG00000078941 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004086 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000020970 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027736 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015527 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016949 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000039848 | 1 retrocopy |
retro_rnor_280 ,
|
Sarcophilus harrisii | ENSSHAG00000017216 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024448 | 2 retrocopies |