RetrogeneDB ID: | retro_ptro_761 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 12:54107581..54108027(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPTRG00000016949 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.67 % |
Parental protein coverage: | 88.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDN-QMREGGVIVDY |
GTPGVGKTTLGKE.AS.SGLKY.NV.DL..EE.LYDGYDE.YDCPIL.EDRVVDELDN.Q..EGGVIVDY | |
Retrocopy | GTPGVGKTTLGKEPASISGLKYMNVSDLS*EEKLYDGYDEQYDCPILEEDRVVDELDN<QTGEGGVIVDY |
Parental | HGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQLPSNK |
HGCDFFP.R.FHIV..LRTDT.VLY.RLETRGYN.K.LTDNIQ.EIFQVLYEEAT.S.KEEIVHQLPSNK | |
Retrocopy | HGCDFFPKRFFHIVLMLRTDTTVLYKRLETRGYNWKTLTDNIQREIFQVLYEEATTSHKEEIVHQLPSNK |
Parental | PEELENNVDQ |
PEELENNVDQ | |
Retrocopy | PEELENNVDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 13 .35 RPM |
SRP007412_cerebellum | 0 .04 RPM | 11 .65 RPM |
SRP007412_heart | 0 .12 RPM | 16 .47 RPM |
SRP007412_kidney | 0 .00 RPM | 12 .32 RPM |
SRP007412_liver | 0 .13 RPM | 9 .00 RPM |
SRP007412_testis | 0 .21 RPM | 104 .96 RPM |