RetrogeneDB ID: | retro_dnov_398 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_4370:80412..80794(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000024524 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.38 % |
Parental protein coverage: | 74.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MLQPNILLTGTPGVGK-TTLGKELASRSGLKYVNVGDLAKEGQLYDGYDEEYDCPILDEDRVVDELENQM |
.LQ.N.LLTG.P..G..T.LGK.LASRSGLKY..VGDLAKEGQLYDG.DEEYDC.ILDE.RVVDELENQ. | |
Retrocopy | VLQLNFLLTGAPRAGQ<TALGKKLASRSGLKYIDVGDLAKEGQLYDGFDEEYDCSILDENRVVDELENQT |
Parental | KEGGVIVDY-HGCDFFPERWFHIVFVLRTDNSVLYKRLETRGYNEKKLKDNIQCEIFQVL |
KEGGVIVDY..GCDFF.E.WFHI.F.LRTD.S...KRLETRG..E.KLKDNIQ.E.F.VL | |
Retrocopy | KEGGVIVDY<PGCDFFHECWFHIAFLLRTDSSIFFKRLETRG*DEEKLKDNIQFENFRVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 20 .03 RPM |
SRP012922_cerebellum | 0 .14 RPM | 15 .53 RPM |
SRP012922_heart | 0 .00 RPM | 16 .94 RPM |
SRP012922_kidney | 0 .00 RPM | 18 .62 RPM |
SRP012922_liver | 0 .00 RPM | 9 .91 RPM |
SRP012922_lung | 0 .00 RPM | 18 .79 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 20 .08 RPM |
SRP012922_spleen | 0 .00 RPM | 23 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012471 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000036421 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000024524 | 3 retrocopies |
retro_dnov_1274, retro_dnov_2010, retro_dnov_398 ,
|
Gorilla gorilla | ENSGGOG00000015545 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016022 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000028932 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019421 | 14 retrocopies | |
Mustela putorius furo | ENSMPUG00000014588 | 1 retrocopy | |
Mus musculus | ENSMUSG00000078941 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004086 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000020970 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027736 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015527 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016949 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000039848 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017216 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024448 | 2 retrocopies |