RetrogeneDB ID: | retro_nleu_2670 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397394.1:397188..397546(+) | ||
Located in intron of: | ENSNLEG00000001151 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSNLEG00000004086 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.46 % |
Parental protein coverage: | 68.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGY-DEEYDCPILDEDRVVDELDNQMREGGVIVDYH |
T..VGKTT.GKEL.S..GLKYINVG..A...QLYDGY..EEYDCPILDE.....E.DN.MREG....DYH | |
Retrocopy | TRRVGKTTRGKELTSRPGLKYINVGGSA-QGQLYDGYNEEEYDCPILDENKSNYESDNHMREGKDTADYH |
Parental | GCDFFPERWFHIV-FVLRTDTN-VLYERLETRGYNEKKLTDNIQCEIFQVL |
GC..FPE...HIV.FVLRTDTN........TRGY..KKL.DNIQCEIF..L | |
Retrocopy | GCGSFPEHRLHIV>FVLRTDTNQCIVHKT*TRGYGQKKLKDNIQCEIFHSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012471 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000036421 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000024524 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000015545 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016022 | 12 retrocopies | |
Myotis lucifugus | ENSMLUG00000028932 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000019421 | 14 retrocopies | |
Mustela putorius furo | ENSMPUG00000014588 | 1 retrocopy | |
Mus musculus | ENSMUSG00000078941 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004086 | 2 retrocopies |
retro_nleu_2237, retro_nleu_2670 ,
|
Oryctolagus cuniculus | ENSOCUG00000020970 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000027736 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015527 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000016949 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000039848 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000017216 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024448 | 2 retrocopies |