RetrogeneDB ID:

retro_meug_364

Retrocopy
location
Organism:Wallaby (Macropus eugenii)
Coordinates:Scaffold105838:4213..4537(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSMEUG00000016022
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_meug_364
ATGAGGCTGTCTAACATCCTCCTCACGAGTACACCAGGGCTTGGAAAGACCACACTAGATTAAGAACTTGCATCAGGAAC
AGGACTGACATACGTTAACGTGGGCAGTTTAGCACAAGAAGGACAATTACATGACAGCTTTGATGAAGAATATGAATGTC
CCATTTTGGATGAAGACAGAGTAGTTGATGAGTTAGAAAATAAAATGAAAGAAAGTGGAGTTATTCCTGATTATCCTGGC
TGTGACTTCTTCCCTTAACATTGGTTTCATATTGTTTCTGTGCTTGGAACAAATAATTCTGTATTATACACAACACTTGA
AAAG

ORF - retro_meug_364 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.41 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMRLPNILLTGTPGVGKTTLGKELASRTGLTYVNVGDLAQEGQLYDGFDEEYECPILDEDRVVDELENKMK
MRL.NILLT.TPG.GKTTL..ELAS.TGLTYVNVG.LAQEGQL.D.FDEEYECPILDEDRVVDELENKMK
RetrocopyMRLSNILLTSTPGLGKTTLD*ELASGTGLTYVNVGSLAQEGQLHDSFDEEYECPILDEDRVVDELENKMK
ParentalEGGVIVDYHGCDFFPERWFHIVFVLQTDNSVLYPRLEK
E.GVI.DY.GCDFFP..WFHIV.VL.T.NSVLY..LEK
RetrocopyESGVIPDYPGCDFFP*HWFHIVSVLGTNNSVLYTTLEK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Macropus eugenii was not studied using RNA-Seq expression data.
Macropus eugenii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_meug_364 retrocopy.
Macropus eugenii was not studied using FANTOM5 data.
retro_meug_364 was not experimentally validated.

Retrocopy orthology:
Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 17 parental genes, and 67 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000124714 retrocopies
Callithrix jacchus ENSCJAG000000364211 retrocopy
Dasypus novemcinctus ENSDNOG000000245243 retrocopies
Gorilla gorilla ENSGGOG000000155451 retrocopy
Macropus eugenii ENSMEUG00000016022 12 retrocopies
Myotis lucifugus ENSMLUG000000289324 retrocopies
Monodelphis domestica ENSMODG0000001942114 retrocopies
Mustela putorius furoENSMPUG000000145881 retrocopy
Mus musculus ENSMUSG000000789412 retrocopies
Nomascus leucogenys ENSNLEG000000040862 retrocopies
Oryctolagus cuniculus ENSOCUG000000209701 retrocopy
Otolemur garnettii ENSOGAG000000277364 retrocopies
Pongo abelii ENSPPYG000000155273 retrocopies
Pan troglodytes ENSPTRG0000001694910 retrocopies
Rattus norvegicus ENSRNOG000000398481 retrocopy
Sarcophilus harrisii ENSSHAG000000172162 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000244482 retrocopies



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