RetrogeneDB ID: | retro_chof_1365 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_274184:33..522(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB28 | ||
Ensembl ID: | ENSCHOG00000001523 | ||
Aliases: | None | ||
Description: | RAB28, member RAS oncogene family [Source:HGNC Symbol;Acc:9768] |
Percent Identity: | 89.57 % |
Parental protein coverage: | 73.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG |
NLNVTLQVWDIGGQTIGGKMLDK.IYGAQGILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG | |
Retrocopy | NLNVTLQVWDIGGQTIGGKMLDKCIYGAQGILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG |
Parental | NKIDLEHMRTVKPEKHLRFCQENGLSSHFVSAKTGDSXXXXXXXXXXXXXXXKLNKAEIEQSQRVVKADI |
NKIDLEHMRTVKPEKHLRFCQENGLSSHFVSAKTGDS...............KLNKAEIEQSQRVVKADI | |
Retrocopy | NKIDLEHMRTVKPEKHLRFCQENGLSSHFVSAKTGDSVFLCFQKVAAEIL*IKLNKAEIEQSQRVVKADI |
Parental | VNYNQESMSRTVNPPRSSMCAVQ |
VNYNQES.SRTVNPPRSSMCAVQ | |
Retrocopy | VNYNQESTSRTVNPPRSSMCAVQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001523 | 1 retrocopy |
retro_chof_1365 ,
|
Callithrix jacchus | ENSCJAG00000012136 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007750 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000012378 | 1 retrocopy | |
Homo sapiens | ENSG00000157869 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000024190 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006792 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022025 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016243 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014610 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015920 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017074 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009274 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022358 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004135 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010939 | 2 retrocopies |