Parental gene: | RAB28, ENSDNOG00000007750 |
| Aliases: | None |
| Description: | RAB28, member RAS oncogene family [Source:HGNC Symbol;Acc:9768] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_4667:55490..162307(-) |
>ENSDNOG00000007750
ATGTCGGACTCTGAGGAAGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCACCTCCGGGAAGACCTC
CTTAGCTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACTCTTCAAGTTTGGGATATAGGAGGGCAGACAATAGGAGGGAAGATGTTGGAT
AAATATATCTATGGAGCGCAGGGAATCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAAGATTG
GTATACTGTGGTGAAGAAAGTAAGTGAGGAATCAGAAACTCAGCCACTGGTTGCCTTGGTGGGCAATAAAATTGATTTGG
AGCATATGCGTACAGTAAAACCTGAAAAACACTTAAGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAGCC
AAGACAGGAGACTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGGGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAATCTATGTCAAGAACGGTTAACCCTCCTA
GAAGCTCTATGTGTGCAGTTCAGTGA
ATGTCGGACTCTGAGGAAGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCACCTCCGGGAAGACCTC
CTTAGCTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACTCTTCAAGTTTGGGATATAGGAGGGCAGACAATAGGAGGGAAGATGTTGGAT
AAATATATCTATGGAGCGCAGGGAATCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAAGATTG
GTATACTGTGGTGAAGAAAGTAAGTGAGGAATCAGAAACTCAGCCACTGGTTGCCTTGGTGGGCAATAAAATTGATTTGG
AGCATATGCGTACAGTAAAACCTGAAAAACACTTAAGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAGCC
AAGACAGGAGACTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAGGGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAATCTATGTCAAGAACGGTTAACCCTCCTA
GAAGCTCTATGTGTGCAGTTCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 20 .42 RPM |
| SRP012922_cerebellum | 15 .12 RPM |
| SRP012922_heart | 28 .31 RPM |
| SRP012922_kidney | 21 .63 RPM |
| SRP012922_liver | 13 .78 RPM |
| SRP012922_lung | 25 .50 RPM |
| SRP012922_quadricep_muscle | 39 .64 RPM |
| SRP012922_spleen | 25 .41 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000001523 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012136 | ortholog_one2one | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000012378 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000157869 | ortholog_one2one | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024190 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006792 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000022025 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016243 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014610 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015920 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017074 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000009274 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000022358 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004135 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010939 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_381 | 71.83 | 63.80 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_1426 | 82.82 | 73.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_1771 | 95.18 | 74.66 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_2419 | 85.07 | 60.63 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000007750 retrocopies