Parental gene:

RAB28, ENSCJAG00000012136

Aliases:None
Description:RAB28, member RAS oncogene family [Source:HGNC Symbol;Acc:9768]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:177915921..178027170(+)


>ENSCJAG00000012136
ATGTCGGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCTTGCTGGGGGACGGCGCCTCCGGGAAGACCTC
TTTAGCCACGTGTTTTGCTCAAGAAACTTTTGGGAAACGGTACAAACAAACTATAGGACTGGACTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGAT
AAATATATCTATGGAGCACAGGGAATCCTCTTGGTGTATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAAGATTG
GTATACTGTGGTGAAGAAAGTGAGTGAGGAGTCAGAAACTCAGCCACTGGTTGCCTTGGTAGGCAATAAAATTGATTTGG
AGCATATGCGAACAATAAAACCTGAAAAACACTTACGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAGCC
AAGACAGGAGACTCTGTCTTCCTGTGCTTTCAGAAAGTTGCTGCTGAAATCCTTGGGATCAAATTAAACAAAGCAGAAAT
AGAACAGTCACAGAGAGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAACCTATGTCAAGAACTGTTAACCCTCCTA
GAAGCTCTATGTGTGCAGTTCAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 21 .18 RPM
SRP051959_skeletal_muscle 11 .27 RPM
SRP051959_lymph_node 13 .31 RPM
SRP051959_lung 19 .02 RPM
SRP051959_liver 17 .78 RPM
SRP051959_kidney 28 .11 RPM
SRP051959_heart 13 .79 RPM
SRP051959_colon 15 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001523 ortholog_one2one 1 retrogene
retro_chof_1365,
Dasypus novemcinctus ENSDNOG00000007750 ortholog_one2one 4 retrogenes
retro_dnov_1426, retro_dnov_1771, retro_dnov_2419, retro_dnov_381,
Dipodomys ordii ENSDORG00000012378 ortholog_one2one 1 retrogene
retro_dord_682,
Homo sapiens ENSG00000157869 ortholog_one2one 7 retrogenes
retro_hsap_4166, retro_hsap_4259, retro_hsap_4261, retro_hsap_4263, retro_hsap_4265, retro_hsap_4317, retro_hsap_4762,
Gorilla gorilla ENSGGOG00000024190 ortholog_one2one 1 retrogene
retro_ggor_2966,
Macropus eugenii ENSMEUG00000006792 ortholog_one2one 4 retrogenes
retro_meug_1079, retro_meug_1182, retro_meug_1510, retro_meug_913,
Macaca mulatta ENSMMUG00000022025 ortholog_one2one 1 retrogene
retro_mmul_1172,
Nomascus leucogenys ENSNLEG00000016243 ortholog_one2one 1 retrogene
retro_nleu_2292,
Pongo abelii ENSPPYG00000014610 ortholog_one2one 1 retrogene
retro_pabe_3707,
Pan troglodytes ENSPTRG00000015920 ortholog_one2one 2 retrogenes
retro_ptro_2893, retro_ptro_3171,
Rattus norvegicus ENSRNOG00000017074 ortholog_one2one 1 retrogene
retro_rnor_1075,
Sarcophilus harrisii ENSSHAG00000009274 ortholog_one2one 1 retrogene
retro_shar_602,
Sus scrofa ENSSSCG00000022358 possible_ortholog 2 retrogenes
retro_sscr_482, retro_sscr_514,
Ictidomys tridecemlineatus ENSSTOG00000004135 ortholog_one2many 1 retrogene
retro_itri_27,
Tarsius syrichta ENSTSYG00000010939 ortholog_one2one 2 retrogenes
retro_tsyr_1450, retro_tsyr_1750,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2713 88.55 80.49
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2. retro_cjac_4126 71.61 73.66
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Download FASTA sequences of all ENSCJAG00000012136 retrocopies