RetrogeneDB ID: | retro_dnov_1771 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_2928:11942..12438(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB28 | ||
Ensembl ID: | ENSDNOG00000007750 | ||
Aliases: | None | ||
Description: | RAB28, member RAS oncogene family [Source:HGNC Symbol;Acc:9768] |
Percent Identity: | 95.18 % |
Parental protein coverage: | 74.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQVWDI |
MSDSE.ESQDRQLKIVVLGDGTS....LATCFAQETFGK.QYKQTIGLDFFLRRITLPGNLNVTLQVWDI | |
Retrocopy | MSDSEKESQDRQLKIVVLGDGTSREDLLATCFAQETFGK>QYKQTIGLDFFLRRITLPGNLNVTLQVWDI |
Parental | GGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTV |
GGQTIGGKML.KYIYGAQGILLVYDITNYQSFENL.DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTV | |
Retrocopy | GGQTIGGKMLEKYIYGAQGILLVYDITNYQSFENLGDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTV |
Parental | KPEKHLRFCQENGFSSHFVSAKTGDS |
KPEKHLRFCQENGFSSHFVSAKTGDS | |
Retrocopy | KPEKHLRFCQENGFSSHFVSAKTGDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 3 .50 RPM | 20 .42 RPM |
SRP012922_cerebellum | 3 .16 RPM | 15 .12 RPM |
SRP012922_heart | 6 .26 RPM | 28 .31 RPM |
SRP012922_kidney | 5 .48 RPM | 21 .63 RPM |
SRP012922_liver | 2 .63 RPM | 13 .78 RPM |
SRP012922_lung | 5 .19 RPM | 25 .50 RPM |
SRP012922_quadricep_muscle | 7 .44 RPM | 39 .64 RPM |
SRP012922_spleen | 6 .07 RPM | 25 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001523 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012136 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007750 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000012378 | 1 retrocopy | |
Homo sapiens | ENSG00000157869 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000024190 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006792 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022025 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016243 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014610 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015920 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017074 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009274 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022358 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004135 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010939 | 2 retrocopies |