RetrogeneDB ID: | retro_dnov_1426 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_20194:15178..15660(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB28 | ||
Ensembl ID: | ENSDNOG00000007750 | ||
Aliases: | None | ||
Description: | RAB28, member RAS oncogene family [Source:HGNC Symbol;Acc:9768] |
Percent Identity: | 82.82 % |
Parental protein coverage: | 73.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQT |
.EEESQD.QLKIVVLG.GTSG.TSLA.CFA.ETFGK..KQTIGL.F.LRRI.LPG.LNVT.QVWDIGGQT | |
Retrocopy | TEEESQDLQLKIVVLGNGTSGRTSLAMCFAHETFGKHNKQTIGLNFILRRIILPGKLNVT-QVWDIGGQT |
Parental | IGGKM-LDKYIYGAQGILLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTVKPE |
I..K..LDKYIYGAQGILLV.DITNYQS.E.LEDWYT.VKKVSEE..T.PL.ALVGNKIDLEH...VKPE | |
Retrocopy | IRDKI<LDKYIYGAQGILLVCDITNYQSSETLEDWYTIVKKVSEEFKTHPLLALVGNKIDLEHRCRVKPE |
Parental | KHLRFCQENGFSSHFVSAKTGDS |
KHLRFCQENGFSSHFVSAKTGDS | |
Retrocopy | KHLRFCQENGFSSHFVSAKTGDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 20 .42 RPM |
SRP012922_cerebellum | 0 .14 RPM | 15 .12 RPM |
SRP012922_heart | 0 .00 RPM | 28 .31 RPM |
SRP012922_kidney | 0 .00 RPM | 21 .63 RPM |
SRP012922_liver | 0 .00 RPM | 13 .78 RPM |
SRP012922_lung | 0 .15 RPM | 25 .50 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 39 .64 RPM |
SRP012922_spleen | 0 .00 RPM | 25 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001523 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012136 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007750 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000012378 | 1 retrocopy | |
Homo sapiens | ENSG00000157869 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000024190 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006792 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022025 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016243 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014610 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015920 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017074 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000009274 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022358 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004135 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010939 | 2 retrocopies |