RetrogeneDB ID: | retro_rnor_1075 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:88198179..88198644(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB28 | ||
Ensembl ID: | ENSRNOG00000017074 | ||
Aliases: | None | ||
Description: | ras-related protein Rab-28 [Source:RefSeq peptide;Acc:NP_446430] |
Percent Identity: | 82.17 % |
Parental protein coverage: | 70.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDF-FLRRITLPGNLNVTLQVWDIGGQTIGGKML |
.QLK...LGD.TS.KTSLA.CFAQETFGKQ.K.TIG.DF.FLRR.TL.G.LN.TLQ.WDIGGQTIG.KML | |
Retrocopy | QQLKVFLLGDSTSRKTSLAMCFAQETFGKQ*KKTIGPDF>FLRRSTLHGYLNATLQIWDIGGQTIGDKML |
Parental | DKYIYGAQ-GILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC |
DKYIYG.Q.GILLVYD.TNYQSFENLEDWYSVVKTVSEESETQ.LVA.VGNKIDLE.M.TVKPDKHL.F. | |
Retrocopy | DKYIYGLQ<GILLVYDTTNYQSFENLEDWYSVVKTVSEESETQSLVAFVGNKIDLEPMGTVKPDKHL*FF |
Parental | QENGFSSHFVSAKTGDS |
QENGFSSH.VS.KTGDS | |
Retrocopy | QENGFSSHSVSVKTGDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 42 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 33 .43 RPM |
SRP017611_liver | 0 .00 RPM | 13 .38 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001523 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012136 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007750 | 4 retrocopies | |
Dipodomys ordii | ENSDORG00000012378 | 1 retrocopy | |
Homo sapiens | ENSG00000157869 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000024190 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006792 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000022025 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016243 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014610 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015920 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000017074 | 1 retrocopy |
retro_rnor_1075 ,
|
Sarcophilus harrisii | ENSSHAG00000009274 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022358 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004135 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010939 | 2 retrocopies |