Parental gene:

RAB28, ENSPPYG00000014610

Aliases:None
Description:ras-related protein Rab-28 [Source:RefSeq peptide;Acc:NP_001124634]
Organism:Orangutan (Pongo abelii)
Coordinates:4:13014277..13133780(-)


>ENSPPYG00000014610
ATGTCGGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGAGCCTCCGGGAAGACCTC
CTTAGCTACGTGTTTTGCTCAAGAAACTTTTGGGAAACGGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGACAGACAATAGGAGGCAAAATGTTGGAT
AAATATATCTATGGAGCACAGGGAGTCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTGGAAGATTG
GTATACTGTGGTGAAGAAAGTGAGCGAGGAGTCAGAAACTCAGCCACTGGTTGCCTTGGTAGGCAATAAAATTGATTTGG
AGCATATGCGAACAATAAAACCTGAAAAACACTTACGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAGCC
AAGACAGGAGACTCTGTCTTCCTGTGCTTTCAGAAAGTTGCTGCTGAAATCGTTGGGATCAAATTAAACAAAGCGGAAAT
AGAACAGTCACAGAGGGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAACCTATGTCAAGGACTGTTAACCCTCCTA
GAAGCTCTATGTGTGCAGTTCAGTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .71 RPM
SRP007412_cerebellum 19 .46 RPM
SRP007412_heart 6 .41 RPM
SRP007412_kidney 8 .35 RPM
SRP007412_liver 5 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001523 ortholog_one2one 1 retrogene
retro_chof_1365,
Callithrix jacchus ENSCJAG00000012136 ortholog_one2one 2 retrogenes
retro_cjac_2713, retro_cjac_4126,
Dasypus novemcinctus ENSDNOG00000007750 ortholog_one2one 4 retrogenes
retro_dnov_1426, retro_dnov_1771, retro_dnov_2419, retro_dnov_381,
Dipodomys ordii ENSDORG00000012378 ortholog_one2one 1 retrogene
retro_dord_682,
Homo sapiens ENSG00000157869 ortholog_one2one 7 retrogenes
retro_hsap_4166, retro_hsap_4259, retro_hsap_4261, retro_hsap_4263, retro_hsap_4265, retro_hsap_4317, retro_hsap_4762,
Gorilla gorilla ENSGGOG00000024190 ortholog_one2one 1 retrogene
retro_ggor_2966,
Macropus eugenii ENSMEUG00000006792 ortholog_one2one 4 retrogenes
retro_meug_1079, retro_meug_1182, retro_meug_1510, retro_meug_913,
Macaca mulatta ENSMMUG00000022025 ortholog_one2one 1 retrogene
retro_mmul_1172,
Nomascus leucogenys ENSNLEG00000016243 ortholog_one2one 1 retrogene
retro_nleu_2292,
Pan troglodytes ENSPTRG00000015920 ortholog_one2one 2 retrogenes
retro_ptro_2893, retro_ptro_3171,
Rattus norvegicus ENSRNOG00000017074 ortholog_one2one 1 retrogene
retro_rnor_1075,
Sarcophilus harrisii ENSSHAG00000009274 ortholog_one2one 1 retrogene
retro_shar_602,
Sus scrofa ENSSSCG00000022358 possible_ortholog 2 retrogenes
retro_sscr_482, retro_sscr_514,
Ictidomys tridecemlineatus ENSSTOG00000004135 ortholog_one2many 1 retrogene
retro_itri_27,
Tarsius syrichta ENSTSYG00000010939 ortholog_one2one 2 retrogenes
retro_tsyr_1450, retro_tsyr_1750,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_3707 73.78 99.55
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Download FASTA sequences of all ENSPPYG00000014610 retrocopies