Parental gene:

ENSSSCG00000022358

Aliases:None
Description:ras-related protein Rab-28 [Source:RefSeq peptide;Acc:NP_001116647]
Organism:Pig (Sus scrofa)
Coordinates:8:8643795..8662721(-)


>ENSSSCG00000022358
ATGTCGGACTCCGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCACCTCCGGGAAGACCTC
CTTAGCTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACTCTTCAAGTTTGGGACATAGGAGGACAGACAATTGGAGGCAAAATGCTGGAT
AAATATATCTATGGAGCACAGGGAATCCTTTTGGTATATGATATTACAAATCATCAAAGCTTTGAGAACTTAGAAGATTG
GTATTCTGTGGTGAAGAAAGTGAGTGAGGAGTCGGAAACTCAGCCACTGGTTGCCTTGGTGGGCAATAAAAGTAAGTTAT
TAATGTTTACTTATGTATAG

Library Parental gene expression (RPM)
SRP014902_placenta 3 .98 RPM
SRP014902_testis 15 .28 RPM
SRP018288_heart 11 .11 RPM
SRP018288_kidney 12 .81 RPM
SRP018288_liver 8 .00 RPM
SRP018288_lung 13 .85 RPM
SRP018856_adipose 7 .61 RPM
SRP035408_brain 10 .07 RPM
SRP035408_liver 10 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009344 possible_ortholog 1 retrogene
retro_amel_469,
Choloepus hoffmanni ENSCHOG00000001523 possible_ortholog 1 retrogene
retro_chof_1365,
Callithrix jacchus ENSCJAG00000012136 possible_ortholog 2 retrogenes
retro_cjac_2713, retro_cjac_4126,
Dasypus novemcinctus ENSDNOG00000007750 possible_ortholog 4 retrogenes
retro_dnov_1426, retro_dnov_1771, retro_dnov_2419, retro_dnov_381,
Dipodomys ordii ENSDORG00000012378 ortholog_one2many 1 retrogene
retro_dord_682,
Homo sapiens ENSG00000157869 possible_ortholog 7 retrogenes
retro_hsap_4166, retro_hsap_4259, retro_hsap_4261, retro_hsap_4263, retro_hsap_4265, retro_hsap_4317, retro_hsap_4762,
Gorilla gorilla ENSGGOG00000024190 possible_ortholog 1 retrogene
retro_ggor_2966,
Macropus eugenii ENSMEUG00000006792 ortholog_one2many 4 retrogenes
retro_meug_1079, retro_meug_1182, retro_meug_1510, retro_meug_913,
Macaca mulatta ENSMMUG00000022025 possible_ortholog 1 retrogene
retro_mmul_1172,
Nomascus leucogenys ENSNLEG00000016243 possible_ortholog 1 retrogene
retro_nleu_2292,
Pongo abelii ENSPPYG00000014610 possible_ortholog 1 retrogene
retro_pabe_3707,
Pan troglodytes ENSPTRG00000015920 possible_ortholog 2 retrogenes
retro_ptro_2893, retro_ptro_3171,
Rattus norvegicus ENSRNOG00000017074 possible_ortholog 1 retrogene
retro_rnor_1075,
Sarcophilus harrisii ENSSHAG00000009274 ortholog_one2many 1 retrogene
retro_shar_602,
Ictidomys tridecemlineatus ENSSTOG00000004135 possible_ortholog 1 retrogene
retro_itri_27,
Tarsius syrichta ENSTSYG00000010939 possible_ortholog 2 retrogenes
retro_tsyr_1450, retro_tsyr_1750,
Tursiops truncatus ENSTTRG00000003622 possible_ortholog 1 retrogene
retro_ttru_697,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_482 78.36 95.68
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2. retro_sscr_514 79.10 95.68
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Download FASTA sequences of all ENSSSCG00000022358 retrocopies