Parental gene: | RAB28, ENSG00000157869 |
| Aliases: | RAB28, CORD18 |
| Description: | RAB28, member RAS oncogene family [Source:HGNC Symbol;Acc:9768] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 4:13362977..13485989(-) |
>ENSG00000157869
ATGTCGGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCGCCTCCGGGAAGACCTC
CTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGAT
AAATATATCTATGGAGCACAGGGAGTCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAAGATTG
GTATACTGTGGTGAAGAAAGTGAGCGAGGAGTCAGAAACTCAGCCACTGGTTGCCTTGGTAGGCAATAAAATTGATTTGG
AGCATATGCGAACAATAAAACCTGAAAAACACTTACGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAGCC
AAGACAGGAGACTCTGTCTTCCTGTGCTTTCAGAAAGTTGCTGCTGAAATCCTTGGGATCAAATTAAACAAAGCAGAAAT
AGAACAGTCACAGAGGGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAACCTATGTCAAGGACTGTTAACCCTCCTA
GAAGCTCTATGTGTGCAGTTCAGTGA
ATGTCGGACTCTGAGGAGGAGAGCCAGGACCGGCAACTGAAAATCGTCGTGCTGGGGGACGGCGCCTCCGGGAAGACCTC
CTTAACTACGTGTTTTGCTCAAGAAACTTTTGGGAAACAGTACAAACAAACTATAGGACTGGATTTCTTTTTGAGAAGGA
TAACATTGCCAGGAAACTTGAATGTTACCCTTCAAATTTGGGATATAGGAGGGCAGACAATAGGAGGCAAAATGTTGGAT
AAATATATCTATGGAGCACAGGGAGTCCTCTTGGTATATGATATTACAAATTATCAAAGCTTTGAGAATTTAGAAGATTG
GTATACTGTGGTGAAGAAAGTGAGCGAGGAGTCAGAAACTCAGCCACTGGTTGCCTTGGTAGGCAATAAAATTGATTTGG
AGCATATGCGAACAATAAAACCTGAAAAACACTTACGGTTTTGCCAGGAAAATGGTTTTAGTAGCCACTTTGTCTCAGCC
AAGACAGGAGACTCTGTCTTCCTGTGCTTTCAGAAAGTTGCTGCTGAAATCCTTGGGATCAAATTAAACAAAGCAGAAAT
AGAACAGTCACAGAGGGTGGTGAAGGCAGATATTGTAAACTACAACCAGGAACCTATGTCAAGGACTGTTAACCCTCCTA
GAAGCTCTATGTGTGCAGTTCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 5 .20 RPM |
| bodymap2_lung | 24 .05 RPM |
| bodymap2_breast | 17 .24 RPM |
| bodymap2_adipose | 14 .67 RPM |
| bodymap2_adrenal | 14 .02 RPM |
| bodymap2_skeletal_muscle | 6 .00 RPM |
| bodymap2_thyroid | 19 .09 RPM |
| bodymap2_prostate | 20 .94 RPM |
| bodymap2_colon | 17 .42 RPM |
| bodymap2_testis | 48 .40 RPM |
| bodymap2_brain | 20 .72 RPM |
| bodymap2_heart | 15 .67 RPM |
| bodymap2_white_blood_cells | 19 .33 RPM |
| bodymap2_lymph_node | 17 .93 RPM |
| bodymap2_ovary | 29 .67 RPM |
| bodymap2_kidney | 17 .85 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000001523 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012136 | ortholog_one2one | 2 retrogenes | |
| Dasypus novemcinctus | ENSDNOG00000007750 | ortholog_one2one | 4 retrogenes | |
| Dipodomys ordii | ENSDORG00000012378 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000024190 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006792 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000022025 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016243 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014610 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000015920 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000017074 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000009274 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000022358 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004135 | ortholog_one2many | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000010939 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_4166 | 63.48 | 51.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_4259 | 66.38 | 51.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_4261 | 66.38 | 51.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_4263 | 66.38 | 51.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_4265 | 63.48 | 51.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_4317 | 66.38 | 51.58 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_hsap_4762 | 72.89 | 99.55 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000157869 retrocopies