RetrogeneDB ID: | retro_cpor_286 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_12:3468317..3468731(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCPOG00000006543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.69 % |
Parental protein coverage: | 72.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWV-PEITHHCPKTPFLLVGTQIDLRD |
.G.F.TAGQED.DRLR.LSYPQTDVFLVCF.VVSPSSFENVKEKWV..EITHHCPKTPFLLVGT..DLRD | |
Retrocopy | IGFFNTAGQED*DRLR*LSYPQTDVFLVCFAVVSPSSFENVKEKWV<AEITHHCPKTPFLLVGTRVDLRD |
Parental | DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT-QKGLKNVFDE-AILAALEPPEPKKSRRCV |
DPSTIEKLAKN.QKP.TPETAEKLARDL.A..YV.CS..T.QKGLKNVF...AILAALEP.EPK.SRRC. | |
Retrocopy | DPSTIEKLAKNRQKPVTPETAEKLARDLEAARYVGCSMFT<QKGLKNVFGQ<AILAALEPAEPKESRRCA |
Parental | LL |
.L | |
Retrocopy | RL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 70 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 83 .54 RPM |
SRP017611_liver | 0 .00 RPM | 48 .58 RPM |
SRP040447_lung | 0 .00 RPM | 114 .91 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 60 .05 RPM |