RetrogeneDB ID: | retro_cpor_1168 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_52:10168735..10169147(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCPOG00000006543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.57 % |
Parental protein coverage: | 71.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | NKFPSEYVPTVFDNYAVTVMIGGEPYT-LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVK |
NKFPS.Y.PT.FDN.AVTV.IG.EPY...GLFDT.GQE.YDR..PLSYPQTDVFLVCFS.V..SSFENVK | |
Retrocopy | NKFPSGYAPTAFDNCAVTVTIGREPYI>IGLFDTTGQENYDRFQPLSYPQTDVFLVCFSAVPLSSFENVK |
Parental | EKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQ-KPITPETAEKLA-RDLKAVKYVECSALTQ |
EKWVPEITH...KTPFLL.GTQI.L.DDPST.EKLAKNK..KPI.PET.EKLA...LKAVKYVECSALTQ | |
Retrocopy | EKWVPEITHPRLKTPFLLMGTQINLIDDPSTTEKLAKNKH>KPIIPETDEKLA<HNLKAVKYVECSALTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 70 .57 RPM |
SRP017611_kidney | 0 .00 RPM | 83 .54 RPM |
SRP017611_liver | 0 .00 RPM | 48 .58 RPM |
SRP040447_lung | 0 .00 RPM | 114 .91 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 60 .05 RPM |